Detail information of GWHGAAZE017604


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009792195.10PREDICTED: calnexin homolog 1-like [Nicotiana sylvestris]
Swissprottr|P29402|CALX1_ARATH0Calnexin homolog 1 (Precursor)
trEMBLtr|W9S9M2|W9S9M2_9ROSA0Calnexin-1-like protein {ECO:0000313|EMBL:EXC32350.1}
TAIR10AT5G61790.10calnexin 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene85157968519248-
GWHAAZE00000005mRNA85157968519248-
GWHAAZE00000005exon85157968515903-
GWHAAZE00000005exon85163748516487-
GWHAAZE00000005exon85165658516651-
GWHAAZE00000005exon85167708517365-
GWHAAZE00000005exon85174288517898-
GWHAAZE00000005exon85189588519027-
GWHAAZE00000005exon85191568519248-
GWHAAZE00000005CDS85191568519248-
GWHAAZE00000005CDS85189588519027-
GWHAAZE00000005CDS85174288517898-
GWHAAZE00000005CDS85167708517365-
GWHAAZE00000005CDS85165658516651-
GWHAAZE00000005CDS85163748516487-
GWHAAZE00000005CDS85157968515903-
Transcript Sequence

Network for GWHGAAZE017604

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0001


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00262.19Calreticulin332115.90E-50
PF00262.19Calreticulin2133671.00E-72
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08054CANX Protein processing in endoplasmic reticulum map04141
Phagosomemap04145
Antigen processing and presentationmap04612
Thyroid hormone synthesismap04918

Gene Ontology

GO term OntologyName
GO:0006457biological_processprotein folding
GO:0005783cellular_componentendoplasmic reticulum
GO:0005509molecular_functioncalcium ion binding
GO:0005515molecular_functionprotein binding
GO:0051082molecular_functionunfolded protein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf297.059
SRR3591706second leaf163.666
SRR3591707mature leaf117.690
SRR3591708Shoot apex195.452
SRR3591709Stem146.307
SRR3591710White floral bud200.233
SRR3591711White flower212.090
SRR3591712Green floral bud206.867
SRR3591713Yellow flower389.412
SRP173429 SRR8316895Juvenile bud stage 201.126
SRR8316896Juvenile bud stage 305.965
SRR8316897Juvenile bud stage 141.712
SRR8316894Third green stage 106.267
SRR8316900Third green stage 272.017
SRR8316901Third green stage 269.146
SRR8316898Complete white stage 93.347
SRR8316899Complete white stage 229.647
SRR8316903Complete white stage 189.226
SRR8316902Silver flowering stage118.865
SRR8316904Silver flowering stage182.922
SRR8316905Silver flowering stage92.108
SRR8316906Gold flowering stage 301.237
SRR8316907Gold flowering stage 286.244
SRR8316908Gold flowering stage 265.626
SRP132670SRR6706286Control143.240
SRR6706287Light intensity 50%138.281
SRR6706288Light intensity 20%146.061
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1229.527
CNS0095593Slightly white alabastrum(diploid) 2196.879
CNS0095594Slightly white alabastrum(diploid) 3225.563
CNS0095595Whole white alabastrum(diploid) 2160.295
CNS0095596Whole white alabastrum(diploid) 3153.788
CNS0095597Whole white alabastrum(diploid) 4115.426
CNS0095598Silvery flower (diploied) 1232.850
CNS0095599Silvery flower (diploied) 2215.607
CNS0095600Silvery flower (diploied) 3289.530
CNS0095601Golden flower (diploid) 1173.628
CNS0095602Golden flower (diploid) 2411.103
CNS0095603Golden flower (diploid) 3404.628
CNS0095604Slightly white alabastrum(tetraploid) 1231.955
CNS0095605Slightly white alabastrum(tetraploid) 2204.713
CNS0095606Slightly white alabastrum(tetraploid) 3391.993
CNS0095607Whole white alabastrum(tetraploid) 1132.002
CNS0095608Whole white alabastrum(tetraploid) 289.847
CNS0095609Whole white alabastrum(tetraploid) 3293.077
CNS0095610Silvery flower (tetraploid) 1224.901
CNS0095611Silvery flower (tetraploid) 2171.037
CNS0095612Silvery flower (tetraploid) 3133.757
CNS0095613Golden flower (tetraploid) 1137.837
CNS0095614Golden flower (tetraploid) 2228.441
CNS0095615Golden flower (tetraploid) 3265.968
CRA001975CRR073297Stem 1172.279
CRR073298Stem 2164.942
CRR073299Stem 3168.576
CRR073300Leaf 1151.127
CRR073301Leaf 2159.705
CRR073302Leaf 3156.228
CRR073303Juvenile bud 1158.863
CRR073304Juvenile bud 2138.346
CRR073305Juvenile bud 3202.025
CRR073306Third green 179.469
CRR073307Third green 281.585
CRR073308Third green 380.219
CRR073309Second white 189.890
CRR073310Second white 265.116
CRR073311Second white 373.955
CRR073312Silver flowering 1219.554
CRR073313Silver flowering 2310.175
CRR073314Silver flowering 3282.502
CRR073315Gold flowering 150.992
CRR073316Gold flowering 274.405
CRR073317Gold flowering 364.916
CRR073318Tawny withering 1172.741
CRR073319Tawny withering 2137.596
CRR073320Tawny withering 3199.207