Gene detail

Detail information of GWHGAAZE017611

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009771378.1	4.5002E-168	PREDICTED: carbonyl reductase [NADPH] 1 isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q9M2E2\|SDR1_ARATH	6E-59	(+)-neomenthol dehydrogenase
trEMBL	tr\|A0A068TSH1\|A0A068TSH1_COFCA	4E-167	Coffea canephora DH200=94 genomic scaffold, scaffold_2 {ECO:0000313\|EMBL:CDO98293.1}
TAIR10	AT5G51030.1	2E-110	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	8602732	8604559	+
GWHAAZE00000005	mRNA	8602732	8604559	+
GWHAAZE00000005	exon	8602732	8603025	+
GWHAAZE00000005	exon	8603493	8603687	+
GWHAAZE00000005	exon	8604164	8604559	+
GWHAAZE00000005	CDS	8602732	8603025	+
GWHAAZE00000005	CDS	8603493	8603687	+
GWHAAZE00000005	CDS	8604164	8604559	+

Transcript Sequence
>GWHTAAZE017631 CGTGTGCATAGTATTATGTTAATCTGGGAAATTAGGTGGTGGTCTGCAGAAACTATTGCTGTGGTGACTGGCGCTAACAGAGGGATTGGATTCGAGATTGCACACCAACTGGCAATACAAGGTTTGACAGTTATTCTGACTTCAAGAGATACTGCTGTTGGTGAAGAAGCAGCAAAGGTCTTACAAGAAGGAGGTTTGAATGTGGTATGCCATCAACTGGATATTGTGGATCCTTCATCTATTAAGTCGTTTGCTGACTGGGTACAAGAAACTTATGGTGGAATAGATATCCTGGTAAACAATGCTGGGGTTAATTTTAATTATGGAACAGACAACTCTGTTGAGCTTGCTGAGAAGGTTATTGACACCAACTACTATGGCACTAAAAATGTAATTAAAGCTTTGATCCCATTAATGAGACCTTCTGCTTCAGGTGCTCGTATAGTTAATATAAGCTCGCGACTGGGGAGACTCAACGGCAGGCGAAATAGAATTGGAGATATTAATTTGAGACAGCAACTAGAAGATGTGGACTCGCTCACAGAGGAATTTATTGACAGGACCATGACCACGTTTTTGGAACAAGTAAAAGACGGCACTTGGACATTGGGTGGATGGCCGCAAACATTTACTGACTATTCGCTATCAAAACTCGCGGTTAATGCTTACAGTAGGGTACTGGCAAAAGCACTTTTGGACCGACCAGATGGTGAGAAGATATATATAAATTGCTATTGCCCAGGTTGGGTGAAGACTGCCATGACTGGTTTTGCCGGCAATATTTCACCGGAGGAAGGTGCTGATACCGCAGTCTGGCTTGCCCTGCTCCCTGAAAAATTTGTTACTGGCAATTTTTTTGCGGAGAGGCGTGAGATAAATTTTTAA

Network for GWHGAAZE017611

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00106.26	adh_short	19	158	1.00E-31

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00079	CBR1	Metabolic pathways	map01100
		Arachidonic acid metabolism	map00590
		Folate biosynthesis	map00790
		Metabolism of xenobiotics by cytochrome P450	map00980

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.431
	SRR3591706	second leaf	11.070
	SRR3591707	mature leaf	7.670
	SRR3591708	Shoot apex	20.458
	SRR3591709	Stem	13.897
	SRR3591710	White floral bud	19.829
	SRR3591711	White flower	15.944
	SRR3591712	Green floral bud	22.443
	SRR3591713	Yellow flower	16.801
SRP173429	SRR8316895	Juvenile bud stage	12.057
	SRR8316896	Juvenile bud stage	16.631
	SRR8316897	Juvenile bud stage	10.299
	SRR8316894	Third green stage	6.800
	SRR8316900	Third green stage	15.919
	SRR8316901	Third green stage	17.664
	SRR8316898	Complete white stage	6.746
	SRR8316899	Complete white stage	17.845
	SRR8316903	Complete white stage	11.897
	SRR8316902	Silver flowering stage	6.762
	SRR8316904	Silver flowering stage	10.786
	SRR8316905	Silver flowering stage	6.913
	SRR8316906	Gold flowering stage	18.967
	SRR8316907	Gold flowering stage	22.102
	SRR8316908	Gold flowering stage	21.611
SRP132670	SRR6706286	Control	14.503
	SRR6706287	Light intensity 50%	14.174
	SRR6706288	Light intensity 20%	15.048
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.803
	CNS0095593	Slightly white alabastrum(diploid) 2	19.952
	CNS0095594	Slightly white alabastrum(diploid) 3	11.855
	CNS0095595	Whole white alabastrum(diploid) 2	16.787
	CNS0095596	Whole white alabastrum(diploid) 3	18.409
	CNS0095597	Whole white alabastrum(diploid) 4	18.553
	CNS0095598	Silvery flower (diploied) 1	15.098
	CNS0095599	Silvery flower (diploied) 2	12.112
	CNS0095600	Silvery flower (diploied) 3	13.688
	CNS0095601	Golden flower (diploid) 1	12.726
	CNS0095602	Golden flower (diploid) 2	13.537
	CNS0095603	Golden flower (diploid) 3	14.080
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.087
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.449
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.998
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.161
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.681
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.020
	CNS0095610	Silvery flower (tetraploid) 1	16.350
	CNS0095611	Silvery flower (tetraploid) 2	13.425
	CNS0095612	Silvery flower (tetraploid) 3	13.341
	CNS0095613	Golden flower (tetraploid) 1	13.549
	CNS0095614	Golden flower (tetraploid) 2	18.203
	CNS0095615	Golden flower (tetraploid) 3	17.977
CRA001975	CRR073297	Stem 1	15.125
	CRR073298	Stem 2	12.434
	CRR073299	Stem 3	10.207
	CRR073300	Leaf 1	12.267
	CRR073301	Leaf 2	11.734
	CRR073302	Leaf 3	11.190
	CRR073303	Juvenile bud 1	10.175
	CRR073304	Juvenile bud 2	9.747
	CRR073305	Juvenile bud 3	10.870
	CRR073306	Third green 1	4.649
	CRR073307	Third green 2	6.688
	CRR073308	Third green 3	6.164
	CRR073309	Second white 1	6.324
	CRR073310	Second white 2	5.619
	CRR073311	Second white 3	9.519
	CRR073312	Silver flowering 1	6.489
	CRR073313	Silver flowering 2	4.159
	CRR073314	Silver flowering 3	5.350
	CRR073315	Gold flowering 1	5.651
	CRR073316	Gold flowering 2	4.754
	CRR073317	Gold flowering 3	3.057
	CRR073318	Tawny withering 1	11.135
	CRR073319	Tawny withering 2	10.507
	CRR073320	Tawny withering 3	7.687