Gene detail

Detail information of GWHGAAZE017618

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010249247.1	PREDICTED: E3 ubiquitin-protein ligase ORTHRUS 2-like [Nelumbo nucifera]
Swissprot	tr\|Q8VYZ0\|ORTH2_ARATH	E3 ubiquitin-protein ligase ORTHRUS 2
trEMBL	tr\|F6HJ69\|F6HJ69_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB52266.1}
TAIR10	AT1G57820.1	Zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	8644053	8650992	+
GWHAAZE00000005	mRNA	8644053	8650992	+
GWHAAZE00000005	exon	8644053	8644517	+
GWHAAZE00000005	exon	8645475	8646007	+
GWHAAZE00000005	exon	8647327	8647452	+
GWHAAZE00000005	exon	8648095	8648194	+
GWHAAZE00000005	exon	8648282	8648343	+
GWHAAZE00000005	exon	8648424	8648526	+
GWHAAZE00000005	exon	8649209	8649353	+
GWHAAZE00000005	exon	8649556	8649773	+
GWHAAZE00000005	exon	8650063	8650992	+
GWHAAZE00000005	CDS	8644053	8644517	+
GWHAAZE00000005	CDS	8645475	8646007	+
GWHAAZE00000005	CDS	8647327	8647452	+
GWHAAZE00000005	CDS	8648095	8648194	+
GWHAAZE00000005	CDS	8648282	8648343	+
GWHAAZE00000005	CDS	8648424	8648526	+
GWHAAZE00000005	CDS	8649209	8649353	+
GWHAAZE00000005	CDS	8649556	8649773	+
GWHAAZE00000005	CDS	8650063	8650992	+

Transcript Sequence
>GWHTAAZE017638 ATGGCGCACGTTAGCCATCTCCCCTGCGACGCCGACGGCATTTGTATGCTCTGTAAGACAAAGCCTTCCGACGAGGATAAGCTCACCTGCAACACGTGCGTCACGCCTTGGCACGTGAGTTGCCTCTCCGTTCGCCCCGAAACCCTAGCGTCCACCTTGCAGTGGGAGTGTCCCGATTGTACGACGCTTGTCGGAGCTCAGGTCGTTCCGGCCGGCGGGAATGGAGTTTCCGACGATCTCCTCAATGCGATTCGGGCGATCGAGGCGGATACTTCTCTGACGGAGAGACAGAAGGCGAAGAGACGACAGGAACTCCTCAGTGGACAGTCAGGATCTCCGGATCGCGATGGAGAGAAGAAGGACAAGGGGAAGGAGAAGGTCGGAGGAGGAAATGATGTTTTGGAGCTGCTCGATGAAAATTTCAAGTGCTCATTCTGTATGCAGTTGCCGGAGAGGCCTGTTACGACACCATGTGGTCATAATTTCTGCTTAAAGTGCTTCCAAAAATGGATCAAAGAAGGGAAACGTACTTGTGCAAAGTGCCGTCGCAGTATTCCCCCCAAAATGGCAAGTCAGCCGCGTATCAACTCTACTCTTGTAGAGGCCATCCGAATGGCCAGGATGTCAAAATCGATAGCTGCTGGAGGCCCTCAGAAAATTTATCATTTTATGCACGATCAAAACCGGCCTGATAAGGCATTTACTACAGAGCGGGCAAAGAAAGCTGGGATGGCTAATGCGGCTAGTGGGAGGATATTTGTCACTGTCCCACAAGACCATTTTGGACCCATCCTTGCTGAGAATGATCCAGAGAGGAAGCAGGGTGTTTTAGTTGGGGAATGTTGGGAGCTTCGCATGGAATGTAGACAATGGGGTATTCACTATCCTCCCGTTGCTGGTATTGCTGGACAATCTGAATATGGTGCCCAGTCAGTAGTGCTTTCAGGAGGTTACGAGGACGATGAGGATCATGGGGAATGGTTCCTGTACACAGGAAGTGGTGGGAGGGATCTTAGTGGGAACAAACGAACTAACAAGGCTCAGTCATTTGATCAAAAGTTTGAGTCTTATAACGAGGCTTTGCGAGTTAGCTGCAACAAAGGCTACCCGGTTCGAGTAGTTAGATCCCATAAAGAGAAGCGTTCTGCTTATGCTCCGGAAAAGGGATTGCGGTATGATGGGATCTACAGGATAGAGAAATGCTGGCGCAAAGTTGGAAAGCAGGGCTTTAAGGTCTGTAGATACTTATTTGTGAGATGTGACAATGATCCTGCACCATGGACAAGCGATGAGCATGGTGATAGGCCTAGACCACTCCCAAAAATTCCTGAGCTTAAAAAGGCAATCGAGATTTCAGAGAGGACAGAGTCTCCATCATGGGGTTATGATGAGGAAAAAGAGAGCTGGGTGTGGAAAAAACCACCTCCTCCTAGCAGAAAACAAGTAACCACAGGAAATCCTGAGGAAAGGAAGAGGGTAAGGCGAGAAATAAAGAGTGCACAATATATGTCTGTAAAAGAGAAACTTTTGAAAGAATTCAGTTGCCTTCTGTGTAAAAACGTGATGACTCTCCCTCTCACAACTCCTTGTGCTCATAATTTCTGCAAGCCTTGTTTGGAAGCAAAATTTTCTGGTAAGACTTTCACTAGAGACAGGACATGCCAAGGTGGACGTACACTTCGTGCTCAAAAGAACACCATGGATTGCCCTGCTTGCTCACATGATATATCTGAATTTCTTCAGAATCCACAGGTGAATAGAGAATTAATGGATGTAATAGAGAAACTCCAATCTGGGAGTGAAGAGTGCAAAAATATTATTGAGAAGTCCACTTTGGATGATGAGGTTCATGCTTCTGAAAGGTGTTTGGATGATTTGTCCCTGAGGGAAGAAAATGACTTGTCAAATTCTCAGGCCAATGGCAAAACTGAAGAAGGGGGTTGTAAGCGGAAGGAAACTGAAACTGAAACGCCAACCAAGGAAAAGCCAAATACCAAACGAAAGAAAAGTGAGCCTAAAGATGGATTGTCAAAGGCTGAGGAAAATGGGGAGGAACAAAAGATTTCCGTGGAGAATGAATTGTCAAATTCTCAGGCCGATGGAAAAACTGAAGGGGGTTGTAAGGGGAAGGAAACTGAATACAACATGCCAACCGAGCAGAAGACAAAGAGGACGTCCAAACGAAAGAAATCCGAGCCTAAAGATGACTTATCAAAGGTTGATGAAAATGTGGAGGGCAAAAAGACTTCTGAGGTTAAGGTTGAAGATGACTTGTCAAAGGCTGAGGAAAATGGGGAGGAACTAAAGATTTCCGTGGAGAATGAATTGTCAAATTCTCAGGCTGATGGAACAACTGAAGAAGGGGGTTGTAAGAGGAAGGAAATTGAAAACAACATGCCAACCGAGCAGAAGCCAAAGAGGACGTCCAAACGAAAGAAATCCGAGCCTAAAGATGACTTATTAAAGGTTGATGAAAAAGCGGAGGGCGAAAAGACTTCTGAGGTGAAGGTTGACGATGGTTACAAATTGGAAGCCCCCGCAGTTAAGTCCTGTGCTAAAAAGGCTTCTCCCGTCAGGGAGAAAACTGAAGGTGGGGCTCGCAGGAGTAGACCACCCAAGGGAGGGGTGAAAACAAATAACAAGAAGGATCAAGACGCTCAAGGTGCTCAAAATGGAATATAA

Network for GWHGAAZE017618

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00097.26	zf-C3HC4	143	181	1.70E-08
PF02182.18	SAD_SRA	274	422	2.30E-54
PF13445.7	zf-RING_UBOX	515	550	5.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.254
	SRR3591706	second leaf	3.018
	SRR3591707	mature leaf	1.229
	SRR3591708	Shoot apex	28.772
	SRR3591709	Stem	20.938
	SRR3591710	White floral bud	1.302
	SRR3591711	White flower	1.498
	SRR3591712	Green floral bud	2.523
	SRR3591713	Yellow flower	0.157
SRP173429	SRR8316895	Juvenile bud stage	5.927
	SRR8316896	Juvenile bud stage	8.884
	SRR8316897	Juvenile bud stage	3.141
	SRR8316894	Third green stage	2.721
	SRR8316900	Third green stage	4.969
	SRR8316901	Third green stage	3.602
	SRR8316898	Complete white stage	0.259
	SRR8316899	Complete white stage	3.070
	SRR8316903	Complete white stage	0.807
	SRR8316902	Silver flowering stage	0.095
	SRR8316904	Silver flowering stage	0.281
	SRR8316905	Silver flowering stage	0.051
	SRR8316906	Gold flowering stage	0.522
	SRR8316907	Gold flowering stage	0.107
	SRR8316908	Gold flowering stage	0.397
SRP132670	SRR6706286	Control	3.968
	SRR6706287	Light intensity 50%	4.112
	SRR6706288	Light intensity 20%	4.718
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.416
	CNS0095593	Slightly white alabastrum(diploid) 2	3.855
	CNS0095594	Slightly white alabastrum(diploid) 3	4.023
	CNS0095595	Whole white alabastrum(diploid) 2	3.759
	CNS0095596	Whole white alabastrum(diploid) 3	2.632
	CNS0095597	Whole white alabastrum(diploid) 4	2.756
	CNS0095598	Silvery flower (diploied) 1	4.046
	CNS0095599	Silvery flower (diploied) 2	3.223
	CNS0095600	Silvery flower (diploied) 3	1.737
	CNS0095601	Golden flower (diploid) 1	2.021
	CNS0095602	Golden flower (diploid) 2	1.021
	CNS0095603	Golden flower (diploid) 3	0.882
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.671
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.533
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.228
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.360
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.031
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.422
	CNS0095610	Silvery flower (tetraploid) 1	1.367
	CNS0095611	Silvery flower (tetraploid) 2	0.967
	CNS0095612	Silvery flower (tetraploid) 3	1.186
	CNS0095613	Golden flower (tetraploid) 1	0.265
	CNS0095614	Golden flower (tetraploid) 2	0.579
	CNS0095615	Golden flower (tetraploid) 3	0.052
CRA001975	CRR073297	Stem 1	12.284
	CRR073298	Stem 2	12.072
	CRR073299	Stem 3	12.761
	CRR073300	Leaf 1	7.242
	CRR073301	Leaf 2	6.168
	CRR073302	Leaf 3	4.599
	CRR073303	Juvenile bud 1	4.853
	CRR073304	Juvenile bud 2	2.157
	CRR073305	Juvenile bud 3	6.118
	CRR073306	Third green 1	0.313
	CRR073307	Third green 2	0.179
	CRR073308	Third green 3	0.772
	CRR073309	Second white 1	0.145
	CRR073310	Second white 2	0.192
	CRR073311	Second white 3	0.108
	CRR073312	Silver flowering 1	0.035
	CRR073313	Silver flowering 2	0.086
	CRR073314	Silver flowering 3	0.196
	CRR073315	Gold flowering 1	1.305
	CRR073316	Gold flowering 2	3.433
	CRR073317	Gold flowering 3	1.629
	CRR073318	Tawny withering 1	20.602
	CRR073319	Tawny withering 2	7.391
	CRR073320	Tawny withering 3	24.802