Detail information of GWHGAAZE017622


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009804176.10PREDICTED: uncharacterized protein LOC104249448 isoform X1 [Nicotiana sylvestris]
trEMBLtr|A0A061FYQ2|A0A061FYQ2_THECC0Nucleotide binding protein, putative isoform 1 {ECO:0000313|EMBL:EOY22645.1}
TAIR10AT5G50970.11E-158transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene86961908701448-
GWHAAZE00000005mRNA86961908701448-
GWHAAZE00000005exon87009298701448-
GWHAAZE00000005exon87006748700830-
GWHAAZE00000005exon86988718698915-
GWHAAZE00000005exon86984318698560-
GWHAAZE00000005exon86971378697507-
GWHAAZE00000005exon86961908696508-
GWHAAZE00000005CDS87009298701448-
GWHAAZE00000005CDS87006748700830-
GWHAAZE00000005CDS86988718698915-
GWHAAZE00000005CDS86984318698560-
GWHAAZE00000005CDS86971378697507-
GWHAAZE00000005CDS86961908696508-
Transcript Sequence

Network for GWHGAAZE017622

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.809
SRR3591706second leaf7.455
SRR3591707mature leaf8.398
SRR3591708Shoot apex9.736
SRR3591709Stem13.913
SRR3591710White floral bud17.155
SRR3591711White flower21.769
SRR3591712Green floral bud16.552
SRR3591713Yellow flower24.040
SRP173429 SRR8316895Juvenile bud stage 8.139
SRR8316896Juvenile bud stage 11.934
SRR8316897Juvenile bud stage 4.928
SRR8316894Third green stage 5.004
SRR8316900Third green stage 16.386
SRR8316901Third green stage 15.736
SRR8316898Complete white stage 8.412
SRR8316899Complete white stage 17.658
SRR8316903Complete white stage 12.948
SRR8316902Silver flowering stage8.806
SRR8316904Silver flowering stage14.155
SRR8316905Silver flowering stage6.729
SRR8316906Gold flowering stage 22.307
SRR8316907Gold flowering stage 21.179
SRR8316908Gold flowering stage 23.549
SRP132670SRR6706286Control11.943
SRR6706287Light intensity 50%13.760
SRR6706288Light intensity 20%14.533
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.015
CNS0095593Slightly white alabastrum(diploid) 26.717
CNS0095594Slightly white alabastrum(diploid) 35.732
CNS0095595Whole white alabastrum(diploid) 27.612
CNS0095596Whole white alabastrum(diploid) 38.149
CNS0095597Whole white alabastrum(diploid) 47.541
CNS0095598Silvery flower (diploied) 111.789
CNS0095599Silvery flower (diploied) 27.844
CNS0095600Silvery flower (diploied) 318.153
CNS0095601Golden flower (diploid) 19.480
CNS0095602Golden flower (diploid) 218.084
CNS0095603Golden flower (diploid) 315.642
CNS0095604Slightly white alabastrum(tetraploid) 111.669
CNS0095605Slightly white alabastrum(tetraploid) 28.662
CNS0095606Slightly white alabastrum(tetraploid) 314.165
CNS0095607Whole white alabastrum(tetraploid) 17.897
CNS0095608Whole white alabastrum(tetraploid) 27.934
CNS0095609Whole white alabastrum(tetraploid) 314.265
CNS0095610Silvery flower (tetraploid) 119.052
CNS0095611Silvery flower (tetraploid) 219.689
CNS0095612Silvery flower (tetraploid) 322.221
CNS0095613Golden flower (tetraploid) 112.495
CNS0095614Golden flower (tetraploid) 220.808
CNS0095615Golden flower (tetraploid) 317.989
CRA001975CRR073297Stem 114.907
CRR073298Stem 213.255
CRR073299Stem 312.862
CRR073300Leaf 114.593
CRR073301Leaf 212.626
CRR073302Leaf 310.991
CRR073303Juvenile bud 111.343
CRR073304Juvenile bud 28.233
CRR073305Juvenile bud 313.344
CRR073306Third green 18.749
CRR073307Third green 28.851
CRR073308Third green 38.621
CRR073309Second white 19.301
CRR073310Second white 214.922
CRR073311Second white 314.636
CRR073312Silver flowering 113.218
CRR073313Silver flowering 213.388
CRR073314Silver flowering 311.810
CRR073315Gold flowering 14.341
CRR073316Gold flowering 210.253
CRR073317Gold flowering 34.236
CRR073318Tawny withering 17.718
CRR073319Tawny withering 26.174
CRR073320Tawny withering 39.595