Detail information of GWHGAAZE017625


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_004297489.10PREDICTED: lysosomal alpha-mannosidase-like [Fragaria vesca subsp. vesca]
Swissprottr|C0HJB3|MANA_CANEN0Alpha-mannosidase, light subunit {ECO:0000303|PubMed:24221485}
trEMBLtr|M5WXQ9|M5WXQ9_PRUPE0Alpha-mannosidase {ECO:0000256|RuleBase:RU361199}
TAIR10AT5G13980.20Glycosyl hydrolase family 38 protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene87265758736220-
GWHAAZE00000005mRNA87265758736220-
GWHAAZE00000005exon87358768736220-
GWHAAZE00000005exon87356988735772-
GWHAAZE00000005exon87354788735566-
GWHAAZE00000005exon87350928735266-
GWHAAZE00000005exon87347248734843-
GWHAAZE00000005exon87344728734555-
GWHAAZE00000005exon87343158734386-
GWHAAZE00000005exon87335118733624-
GWHAAZE00000005exon87330848733184-
GWHAAZE00000005exon87328938732986-
GWHAAZE00000005exon87326458732812-
GWHAAZE00000005exon87324258732550-
GWHAAZE00000005exon87316958731760-
GWHAAZE00000005exon87314908731546-
GWHAAZE00000005exon87309178731136-
GWHAAZE00000005exon87306528730791-
GWHAAZE00000005exon87304898730557-
GWHAAZE00000005exon87301178730176-
GWHAAZE00000005exon87299458730016-
GWHAAZE00000005exon87292958729342-
GWHAAZE00000005exon87291018729220-
GWHAAZE00000005exon87289048728969-
GWHAAZE00000005exon87284358728547-
GWHAAZE00000005exon87282078728291-
GWHAAZE00000005exon87278368727946-
GWHAAZE00000005exon87276458727740-
GWHAAZE00000005exon87274888727535-
GWHAAZE00000005exon87271578727225-
GWHAAZE00000005exon87268818727073-
GWHAAZE00000005exon87265758726669-
GWHAAZE00000005five_prime_UTR87360748736220-
GWHAAZE00000005CDS87358768736073-
GWHAAZE00000005CDS87356988735772-
GWHAAZE00000005CDS87354788735566-
GWHAAZE00000005CDS87350928735266-
GWHAAZE00000005CDS87347248734843-
GWHAAZE00000005CDS87344728734555-
GWHAAZE00000005CDS87343158734386-
GWHAAZE00000005CDS87335118733624-
GWHAAZE00000005CDS87330848733184-
GWHAAZE00000005CDS87328938732986-
GWHAAZE00000005CDS87326458732812-
GWHAAZE00000005CDS87324258732550-
GWHAAZE00000005CDS87316958731760-
GWHAAZE00000005CDS87314908731546-
GWHAAZE00000005CDS87309178731136-
GWHAAZE00000005CDS87306528730791-
GWHAAZE00000005CDS87304898730557-
GWHAAZE00000005CDS87301178730176-
GWHAAZE00000005CDS87299458730016-
GWHAAZE00000005CDS87292958729342-
GWHAAZE00000005CDS87291018729220-
GWHAAZE00000005CDS87289048728969-
GWHAAZE00000005CDS87284358728547-
GWHAAZE00000005CDS87282078728291-
GWHAAZE00000005CDS87278368727946-
GWHAAZE00000005CDS87276458727740-
GWHAAZE00000005CDS87274888727535-
GWHAAZE00000005CDS87271578727225-
GWHAAZE00000005CDS87268818727073-
GWHAAZE00000005CDS87265758726669-
Transcript Sequence

Network for GWHGAAZE017625

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01074.23Glyco_hydro_38N373458.60E-91
PF09261.12Alpha-mann_mid3504425.30E-21
PF07748.14Glyco_hydro_38C6108236.80E-44
PF17677.2Glyco_hydro38C290610121.20E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01191MAN2C1 Other glycan degradation map00511

Gene Ontology

GO term OntologyName
GO:0006013biological_processmannose metabolic process
GO:0005975biological_processcarbohydrate metabolic process
GO:0004559molecular_functionalpha-mannosidase activity
GO:0003824molecular_functioncatalytic activity
GO:0030246molecular_functioncarbohydrate binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf98.249
SRR3591706second leaf42.939
SRR3591707mature leaf40.123
SRR3591708Shoot apex44.625
SRR3591709Stem85.638
SRR3591710White floral bud56.560
SRR3591711White flower63.673
SRR3591712Green floral bud55.961
SRR3591713Yellow flower26.647
SRP173429 SRR8316895Juvenile bud stage 53.311
SRR8316896Juvenile bud stage 74.127
SRR8316897Juvenile bud stage 36.060
SRR8316894Third green stage 25.638
SRR8316900Third green stage 69.550
SRR8316901Third green stage 65.744
SRR8316898Complete white stage 23.086
SRR8316899Complete white stage 68.201
SRR8316903Complete white stage 45.283
SRR8316902Silver flowering stage30.941
SRR8316904Silver flowering stage55.044
SRR8316905Silver flowering stage25.324
SRR8316906Gold flowering stage 62.081
SRR8316907Gold flowering stage 64.419
SRR8316908Gold flowering stage 73.110
SRP132670SRR6706286Control70.266
SRR6706287Light intensity 50%60.179
SRR6706288Light intensity 20%62.002
CNP0000432CNS0095592Slightly white alabastrum(diploid) 148.292
CNS0095593Slightly white alabastrum(diploid) 242.358
CNS0095594Slightly white alabastrum(diploid) 342.391
CNS0095595Whole white alabastrum(diploid) 238.936
CNS0095596Whole white alabastrum(diploid) 338.632
CNS0095597Whole white alabastrum(diploid) 437.015
CNS0095598Silvery flower (diploied) 169.703
CNS0095599Silvery flower (diploied) 265.940
CNS0095600Silvery flower (diploied) 396.735
CNS0095601Golden flower (diploid) 172.697
CNS0095602Golden flower (diploid) 293.441
CNS0095603Golden flower (diploid) 388.661
CNS0095604Slightly white alabastrum(tetraploid) 140.457
CNS0095605Slightly white alabastrum(tetraploid) 236.544
CNS0095606Slightly white alabastrum(tetraploid) 399.775
CNS0095607Whole white alabastrum(tetraploid) 127.039
CNS0095608Whole white alabastrum(tetraploid) 222.326
CNS0095609Whole white alabastrum(tetraploid) 380.834
CNS0095610Silvery flower (tetraploid) 1119.293
CNS0095611Silvery flower (tetraploid) 2123.385
CNS0095612Silvery flower (tetraploid) 389.135
CNS0095613Golden flower (tetraploid) 137.080
CNS0095614Golden flower (tetraploid) 277.338
CNS0095615Golden flower (tetraploid) 345.485
CRA001975CRR073297Stem 151.538
CRR073298Stem 246.868
CRR073299Stem 336.335
CRR073300Leaf 145.291
CRR073301Leaf 240.142
CRR073302Leaf 337.610
CRR073303Juvenile bud 137.797
CRR073304Juvenile bud 233.735
CRR073305Juvenile bud 338.613
CRR073306Third green 127.236
CRR073307Third green 221.382
CRR073308Third green 328.637
CRR073309Second white 122.629
CRR073310Second white 219.917
CRR073311Second white 313.974
CRR073312Silver flowering 110.324
CRR073313Silver flowering 28.693
CRR073314Silver flowering 39.854
CRR073315Gold flowering 115.867
CRR073316Gold flowering 225.397
CRR073317Gold flowering 314.848
CRR073318Tawny withering 122.451
CRR073319Tawny withering 220.806
CRR073320Tawny withering 331.424