Gene detail

Detail information of GWHGAAZE017627

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP19761.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q5W7F2\|AGD3_ARATH	ADP-ribosylation factor GTPase-activating protein AGD3
trEMBL	tr\|A0A068VGD0\|A0A068VGD0_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_663 {ECO:0000313\|EMBL:CDP19761.1}
TAIR10	AT5G13300.1	ARF GTPase-activating protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	8769218	8781442	+
GWHAAZE00000005	mRNA	8769218	8781442	+
GWHAAZE00000005	exon	8769218	8769360	+
GWHAAZE00000005	exon	8769726	8769874	+
GWHAAZE00000005	exon	8769974	8770044	+
GWHAAZE00000005	exon	8770918	8770980	+
GWHAAZE00000005	exon	8771400	8771444	+
GWHAAZE00000005	exon	8772314	8772402	+
GWHAAZE00000005	exon	8772484	8772544	+
GWHAAZE00000005	exon	8772654	8772749	+
GWHAAZE00000005	exon	8772833	8772874	+
GWHAAZE00000005	exon	8774501	8774716	+
GWHAAZE00000005	exon	8774818	8774949	+
GWHAAZE00000005	exon	8775323	8775553	+
GWHAAZE00000005	exon	8776154	8776240	+
GWHAAZE00000005	exon	8776326	8776628	+
GWHAAZE00000005	exon	8778087	8778232	+
GWHAAZE00000005	exon	8778310	8778400	+
GWHAAZE00000005	exon	8779603	8780099	+
GWHAAZE00000005	exon	8781104	8781442	+
GWHAAZE00000005	CDS	8769218	8769360	+
GWHAAZE00000005	CDS	8769726	8769874	+
GWHAAZE00000005	CDS	8769974	8770044	+
GWHAAZE00000005	CDS	8770918	8770980	+
GWHAAZE00000005	CDS	8771400	8771444	+
GWHAAZE00000005	CDS	8772314	8772402	+
GWHAAZE00000005	CDS	8772484	8772544	+
GWHAAZE00000005	CDS	8772654	8772749	+
GWHAAZE00000005	CDS	8772833	8772874	+
GWHAAZE00000005	CDS	8774501	8774716	+
GWHAAZE00000005	CDS	8774818	8774949	+
GWHAAZE00000005	CDS	8775323	8775553	+
GWHAAZE00000005	CDS	8776154	8776240	+
GWHAAZE00000005	CDS	8776326	8776628	+
GWHAAZE00000005	CDS	8778087	8778232	+
GWHAAZE00000005	CDS	8778310	8778400	+
GWHAAZE00000005	CDS	8779603	8780099	+
GWHAAZE00000005	CDS	8781104	8781221	+
GWHAAZE00000005	three_prime_UTR	8781222	8781442	+

Transcript Sequence
>GWHTAAZE017647 ATGTGCTTGATCGTTTTTCAGCCCCTCTCTTGGTTTCTCGTGTTCATTGGTGTTCTTCCACCCCTCTCTGTTTCGAGTTGTTATTCATCATTCTTATTCCCGTCTCTTTATTTTGAGCTTCAGAAGGCGTATTTACACTTAAGAGAAGCACTTGGTGAAGGGTATGATAAAGACATTGCTTTTGCAAGTGCCCTTGAAACTTTTGGAGGAGGGCAGGATGATCCTATTTCTGTTTCTTTTGGAGGTATATCTACTTCATTTTTCTCACCTGGATTTGTTTCCATTACAAGAGGTCCTGATATGGCCAAATTTGCACTCACTTTGAGGGAAACTGGAACTTACAAGGAAGTTCTTCGATCACAGGTTGAACAACTGCTAAATGATAGGTTGCTTCACTTCACCAGTATCGACCTTCAAGATGTCAAGGAAGCTCGGAAGCGTTTCGACAAGGCTAATGCTATCTACGATCAGGTCCGTGAGAAGTTTCTATCGCTGAGGAAAAGTACCAAGACAGGTGTAGCCGCTGCCGCAGAGGAGGTATCACGTACTAGTTCTCAGAAAGAGACGTTCCAGGAACTTCACAATGCGAGAACAACATTCGAGCAAGCCCGCTTCAATCTGGTTGGTGCTCTTTCTGCTGTTGAGGCAAAGAAGAGGTTTGAGTTGTTGGAAGCTGTTAGTGGGATGATGGGTGCTCAGCTTCAATATTTCAAACAGGGATATGAGCTATTGCATCAGATGGAGCCTTATATCAACCAGGTCTTGGTTTATGCTCAACAGTCGAAAGAAATATTTAACCATCAGCAGACAGCGCTGAATGAAAGGATGGAAGAGTATAAAAGGCAGGTCGATCAAGAAAGTAGGCCGTCATTGAATGGGTCCCAGGGTTCTTCACAGGGAGACGCCCCACAGCCTTTCCCTAAAAGTTCTCATAAAATGATAGAGGCCGTAATGCAGTCTTCGACAGAGGGGAAGGTTCAAACCATTAAACAAGGATATCTATCGAAACGTTCCTCCAATTTGAGGGGTGACTGGAAGAGAAGGTTCTTTGTTCTTGATAGTAGGGGGATGCTATTGTACTATCGCAGACAATGGAGCAGGTCATTTGGAGCGGGGAATCAATTTTCCACAAGTAGAAATAGTCAATCTGAACCTGCTTATGGGTTGCTTAGCCGGCTGCTGTCTTCTAATTACCATGGAGGTGTACATGATGAAAGAGCCGGTGCAGCACGTCACACGGTGAACTTGTTGACATCAACAATAAAGGCTGATGCAGATCAGTCATATTTGAGGTTTTGCTTCAGGATTATTTCACCAATAAAGAGCTACACTTTGCAGGCAGAGAATGCAGTGGAGCAAATGGACTGGATTGACAAAATTACAGGAGTAATTACTTCTTTATTGACCTCACAAGCTCCTGAGAGGTGTCTCTGTACCAGTCCAACCAGCGAAACTAGTAGTCCTTCTTTTCACAACCAAAGGGAAATTGAAGACTCTGAAAAGGACTTTGCTTCTAGAAATGTAATACGGACATCCAGAAGTTGCCAACAGCTATGCTCCAGTGCAAATTGTGAGAAGTCGGTTAATGCATTGAAAAAATTACCTGGGAATGATAAATGCGCCGATTGTGGTGCCCCTGAACCAGAGTGGGCTTCCTTAAACCTTGGTATTCTTGTTTGTATAGAATGTTCTGGTGTTCACCGTAACCTTGGTGTACATATATCCAAGGTAAGATCTTTAGTGCTTGATGTCAAAGCGTGGGAGCCTTCCGTGATAACATTATTTCGGGCACTGGGTAATGTTTTTGTGAACTCAATATGGGAGGGACTTCTGCACGCAGCAAGAACTTTTCAGGCTGATGAAATACCAATGAGGATTTTTGAGTCTGACAAACACAGACAGTTTTTTAGCAAACCCAAACGTGATGATCATATTTCAGCAAAGGAGAAGTTCATTTATGCTAAGTACACAGAAAAACGTTTCGTACAGAAAGTAAAAGACAATCTGCCTCTTCCTTCTGTTGCACAACAATTGTGGCATAGTGTTCGAAGTAATGACAAGAAGTCGGTCTACCGACTCATAGTGGTGTGTGAAGCAGATGTCAACGCGATCTACGTTCAAGCATTGCCTGGTACATCTCTAACCAATGCAACGTGGTCACAAGATCAGCAGTCAAACCTTGATGACAACTTTGAAAGCGGCTTAACTCGTGCTTCTTTTGACAAGGCCTCCTCTAGTTCTTTGAATGCACTTGGAGGAGATAGTGAAGATCAGTTTATGGATGAGTCTCTTGATGGCTGTTCCTTGCTTCACCTGGCCTGTCAAACTGCTGACCTTGGCATGGTAGAGCTGCTCCTACAGCACGGTGCTAACATAAATACCTGTGATTCGAGGGCTCAGACCCCATTGCATCATAGTATTCTCAGAGGAAGACTCGCAATTGCAAAACTGTTGCTGACCAGAGGAGCTAACCCACTAGCTATGGACTGTGAAGATAAAACCCCACTTCAGCTTGTGACAGAATCAGACATGGATGATGATGTTGAGATTCTTGCTCTAATGAAAAAAACAAAGAGATAGCGCTGTTCATCAACTAAGCACAGACCACATTGAAGTCCCATAGTAGAATGAAAAGAGCCGAGACATTACGAGTTGGGTTAAGTTGGGTGATCAGTTATGCTGGCTCCAGCCTGTCTTTTGGCTTTAGATGCACCACAGGGTTACATTTTTGCAATTCTCTGTTGAGAGCTTTAGCATACTCTTCTGTAGCATGCCACATTTTTGTCTTAATTCATCTGGTC

Network for GWHGAAZE017627

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16746.6	BAR_3	101	269	1.60E-21
PF00169.30	PH	329	464	1.00E-10
PF01412.19	ArfGap	527	664	9.80E-34
PF13637.7	Ank_4	768	819	1.20E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12489	ACAP	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0005096	molecular_function	GTPase activator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.806
	SRR3591706	second leaf	3.979
	SRR3591707	mature leaf	4.346
	SRR3591708	Shoot apex	7.918
	SRR3591709	Stem	4.424
	SRR3591710	White floral bud	9.968
	SRR3591711	White flower	3.360
	SRR3591712	Green floral bud	16.249
	SRR3591713	Yellow flower	2.063
SRP173429	SRR8316895	Juvenile bud stage	7.407
	SRR8316896	Juvenile bud stage	15.437
	SRR8316897	Juvenile bud stage	7.074
	SRR8316894	Third green stage	7.655
	SRR8316900	Third green stage	16.341
	SRR8316901	Third green stage	18.403
	SRR8316898	Complete white stage	0.915
	SRR8316899	Complete white stage	5.127
	SRR8316903	Complete white stage	1.841
	SRR8316902	Silver flowering stage	1.167
	SRR8316904	Silver flowering stage	1.825
	SRR8316905	Silver flowering stage	0.911
	SRR8316906	Gold flowering stage	1.787
	SRR8316907	Gold flowering stage	1.416
	SRR8316908	Gold flowering stage	1.212
SRP132670	SRR6706286	Control	9.876
	SRR6706287	Light intensity 50%	10.235
	SRR6706288	Light intensity 20%	9.701
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.312
	CNS0095593	Slightly white alabastrum(diploid) 2	13.136
	CNS0095594	Slightly white alabastrum(diploid) 3	14.615
	CNS0095595	Whole white alabastrum(diploid) 2	20.724
	CNS0095596	Whole white alabastrum(diploid) 3	21.891
	CNS0095597	Whole white alabastrum(diploid) 4	16.473
	CNS0095598	Silvery flower (diploied) 1	5.631
	CNS0095599	Silvery flower (diploied) 2	2.701
	CNS0095600	Silvery flower (diploied) 3	1.806
	CNS0095601	Golden flower (diploid) 1	2.983
	CNS0095602	Golden flower (diploid) 2	1.802
	CNS0095603	Golden flower (diploid) 3	1.693
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.423
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.532
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.590
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.368
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.734
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.529
	CNS0095610	Silvery flower (tetraploid) 1	2.272
	CNS0095611	Silvery flower (tetraploid) 2	2.412
	CNS0095612	Silvery flower (tetraploid) 3	3.919
	CNS0095613	Golden flower (tetraploid) 1	1.237
	CNS0095614	Golden flower (tetraploid) 2	1.872
	CNS0095615	Golden flower (tetraploid) 3	1.642
CRA001975	CRR073297	Stem 1	11.801
	CRR073298	Stem 2	9.939
	CRR073299	Stem 3	3.105
	CRR073300	Leaf 1	12.533
	CRR073301	Leaf 2	12.521
	CRR073302	Leaf 3	4.974
	CRR073303	Juvenile bud 1	5.284
	CRR073304	Juvenile bud 2	2.363
	CRR073305	Juvenile bud 3	1.641
	CRR073306	Third green 1	0.918
	CRR073307	Third green 2	0.582
	CRR073308	Third green 3	1.203
	CRR073309	Second white 1	0.029
	CRR073310	Second white 2	0.514
	CRR073311	Second white 3	0.582
	CRR073312	Silver flowering 1	0.623
	CRR073313	Silver flowering 2	1.008
	CRR073314	Silver flowering 3	0.162
	CRR073315	Gold flowering 1	2.139
	CRR073316	Gold flowering 2	2.341
	CRR073317	Gold flowering 3	0.384
	CRR073318	Tawny withering 1	3.219
	CRR073319	Tawny withering 2	3.902
	CRR073320	Tawny withering 3	2.456