Detail information of GWHGAAZE017649


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008459895.10PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [Cucumis melo]
Swissprottr|Q6Z1G7|ODPB1_ORYSJ0Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial (Precursor)
trEMBLtr|A0A0A0KF95|A0A0A0KF95_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN46426.1}
TAIR10AT5G50850.14E-170Transketolase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene91666509169981-
GWHAAZE00000005mRNA91666509169981-
GWHAAZE00000005exon91699439169981-
GWHAAZE00000005exon91697869169845-
GWHAAZE00000005exon91695749169654-
GWHAAZE00000005exon91694419169467-
GWHAAZE00000005exon91692819169343-
GWHAAZE00000005exon91689539169039-
GWHAAZE00000005exon91682399168364-
GWHAAZE00000005exon91677999167932-
GWHAAZE00000005exon91676539167725-
GWHAAZE00000005exon91674869167551-
GWHAAZE00000005exon91673329167370-
GWHAAZE00000005exon91671039167227-
GWHAAZE00000005exon91668589166972-
GWHAAZE00000005exon91666509166700-
GWHAAZE00000005CDS91699439169981-
GWHAAZE00000005CDS91697869169845-
GWHAAZE00000005CDS91695749169654-
GWHAAZE00000005CDS91694419169467-
GWHAAZE00000005CDS91692819169343-
GWHAAZE00000005CDS91689539169039-
GWHAAZE00000005CDS91682399168364-
GWHAAZE00000005CDS91677999167932-
GWHAAZE00000005CDS91676539167725-
GWHAAZE00000005CDS91674869167551-
GWHAAZE00000005CDS91673329167370-
GWHAAZE00000005CDS91671039167227-
GWHAAZE00000005CDS91668589166972-
GWHAAZE00000005CDS91666509166700-
Transcript Sequence

Network for GWHGAAZE017649

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02779.25Transket_pyr332081.30E-44
PF02780.21Transketolase_C2273497.00E-41
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00162PDHB, pdhB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glycolysis / Gluconeogenesismap00010
Citrate cyclemap00020
Pyruvate metabolismmap00620
HIF-1 signaling pathwaymap04066
Glucagon signaling pathwaymap04922

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.025
SRR3591706second leaf1.223
SRR3591707mature leaf2.356
SRR3591708Shoot apex1.119
SRR3591709Stem2.101
SRR3591710White floral bud5.975
SRR3591711White flower1.613
SRR3591712Green floral bud24.730
SRR3591713Yellow flower0.390
SRP173429 SRR8316895Juvenile bud stage 12.812
SRR8316896Juvenile bud stage 35.404
SRR8316897Juvenile bud stage 10.808
SRR8316894Third green stage 10.223
SRR8316900Third green stage 30.856
SRR8316901Third green stage 35.616
SRR8316898Complete white stage 0.631
SRR8316899Complete white stage 0.469
SRR8316903Complete white stage 1.032
SRR8316902Silver flowering stage2.075
SRR8316904Silver flowering stage2.274
SRR8316905Silver flowering stage0.971
SRR8316906Gold flowering stage 2.715
SRR8316907Gold flowering stage 3.192
SRR8316908Gold flowering stage 3.301
SRP132670SRR6706286Control7.940
SRR6706287Light intensity 50%8.145
SRR6706288Light intensity 20%7.081
CNP0000432CNS0095592Slightly white alabastrum(diploid) 130.417
CNS0095593Slightly white alabastrum(diploid) 219.001
CNS0095594Slightly white alabastrum(diploid) 338.416
CNS0095595Whole white alabastrum(diploid) 229.932
CNS0095596Whole white alabastrum(diploid) 340.917
CNS0095597Whole white alabastrum(diploid) 430.698
CNS0095598Silvery flower (diploied) 11.201
CNS0095599Silvery flower (diploied) 22.031
CNS0095600Silvery flower (diploied) 30.894
CNS0095601Golden flower (diploid) 11.920
CNS0095602Golden flower (diploid) 20.604
CNS0095603Golden flower (diploid) 30.531
CNS0095604Slightly white alabastrum(tetraploid) 138.042
CNS0095605Slightly white alabastrum(tetraploid) 234.420
CNS0095606Slightly white alabastrum(tetraploid) 31.404
CNS0095607Whole white alabastrum(tetraploid) 140.363
CNS0095608Whole white alabastrum(tetraploid) 243.094
CNS0095609Whole white alabastrum(tetraploid) 327.944
CNS0095610Silvery flower (tetraploid) 15.934
CNS0095611Silvery flower (tetraploid) 27.774
CNS0095612Silvery flower (tetraploid) 310.906
CNS0095613Golden flower (tetraploid) 12.323
CNS0095614Golden flower (tetraploid) 24.521
CNS0095615Golden flower (tetraploid) 31.132
CRA001975CRR073297Stem 114.969
CRR073298Stem 212.901
CRR073299Stem 38.086
CRR073300Leaf 115.823
CRR073301Leaf 215.100
CRR073302Leaf 316.715
CRR073303Juvenile bud 114.336
CRR073304Juvenile bud 213.068
CRR073305Juvenile bud 30.501
CRR073306Third green 14.477
CRR073307Third green 25.722
CRR073308Third green 32.899
CRR073309Second white 12.719
CRR073310Second white 21.503
CRR073311Second white 31.780
CRR073312Silver flowering 12.199
CRR073313Silver flowering 22.704
CRR073314Silver flowering 31.546
CRR073315Gold flowering 11.267
CRR073316Gold flowering 20.349
CRR073317Gold flowering 31.485
CRR073318Tawny withering 11.893
CRR073319Tawny withering 22.292
CRR073320Tawny withering 31.490