Detail information of GWHGAAZE017652


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP14991.15.07085E-63unnamed protein product [Coffea canephora]
Swissprottr|Q8H4S4|NAC10_ORYSJ3E-38NAC transcription factor ONAC010
trEMBLtr|A0A068V2V0|A0A068V2V0_COFCA2E-63Coffea canephora DH200=94 genomic scaffold, scaffold_94 {ECO:0000313|EMBL:CDP14991.1}
TAIR10AT5G13180.12E-45NAC domain containing protein 83

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene91994749200174-
GWHAAZE00000005mRNA91994749200174-
GWHAAZE00000005exon91999949200174-
GWHAAZE00000005exon91994749199736-
GWHAAZE00000005CDS91999949200174-
GWHAAZE00000005CDS91994749199736-
Transcript Sequence

Network for GWHGAAZE017652

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02365.16NAM151415.30E-31
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyNAC

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0003677molecular_functionDNA binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE017652.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 3051015202530354045505560Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.823
SRR3591706second leaf9.177
SRR3591707mature leaf0.000
SRR3591708Shoot apex15.403
SRR3591709Stem41.311
SRR3591710White floral bud36.757
SRR3591711White flower20.854
SRR3591712Green floral bud20.439
SRR3591713Yellow flower1.019
SRP173429 SRR8316895Juvenile bud stage 3.309
SRR8316896Juvenile bud stage 4.041
SRR8316897Juvenile bud stage 0.977
SRR8316894Third green stage 2.276
SRR8316900Third green stage 10.705
SRR8316901Third green stage 6.943
SRR8316898Complete white stage 17.374
SRR8316899Complete white stage 12.705
SRR8316903Complete white stage 29.267
SRR8316902Silver flowering stage33.975
SRR8316904Silver flowering stage19.901
SRR8316905Silver flowering stage0.764
SRR8316906Gold flowering stage 0.000
SRR8316907Gold flowering stage 7.618
SRR8316908Gold flowering stage 0.479
SRP132670SRR6706286Control7.459
SRR6706287Light intensity 50%6.328
SRR6706288Light intensity 20%7.069
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.600
CNS0095593Slightly white alabastrum(diploid) 29.714
CNS0095594Slightly white alabastrum(diploid) 35.048
CNS0095595Whole white alabastrum(diploid) 28.501
CNS0095596Whole white alabastrum(diploid) 38.904
CNS0095597Whole white alabastrum(diploid) 45.669
CNS0095598Silvery flower (diploied) 10.159
CNS0095599Silvery flower (diploied) 20.377
CNS0095600Silvery flower (diploied) 38.473
CNS0095601Golden flower (diploid) 10.000
CNS0095602Golden flower (diploid) 20.161
CNS0095603Golden flower (diploid) 30.472
CNS0095604Slightly white alabastrum(tetraploid) 17.523
CNS0095605Slightly white alabastrum(tetraploid) 29.593
CNS0095606Slightly white alabastrum(tetraploid) 39.342
CNS0095607Whole white alabastrum(tetraploid) 13.491
CNS0095608Whole white alabastrum(tetraploid) 21.395
CNS0095609Whole white alabastrum(tetraploid) 36.714
CNS0095610Silvery flower (tetraploid) 113.554
CNS0095611Silvery flower (tetraploid) 24.002
CNS0095612Silvery flower (tetraploid) 31.601
CNS0095613Golden flower (tetraploid) 10.340
CNS0095614Golden flower (tetraploid) 22.397
CNS0095615Golden flower (tetraploid) 31.667
CRA001975CRR073297Stem 10.283
CRR073298Stem 20.784
CRR073299Stem 30.461
CRR073300Leaf 10.912
CRR073301Leaf 21.831
CRR073302Leaf 30.444
CRR073303Juvenile bud 10.443
CRR073304Juvenile bud 20.643
CRR073305Juvenile bud 30.630
CRR073306Third green 10.722
CRR073307Third green 21.244
CRR073308Third green 31.796
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.052
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.000
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.102
CRR073319Tawny withering 20.940
CRR073320Tawny withering 31.331