Gene detail

Detail information of GWHGAAZE017663

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010663771.1	0	PREDICTED: SWI/SNF complex subunit SWI3A isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8W475\|SWI3A_ARATH	2E-143	SWI/SNF complex subunit SWI3A
trEMBL	tr\|D7SH24\|D7SH24_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15704.3}
TAIR10	AT2G47620.1	3E-111	SWITCH/sucrose nonfermenting 3A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	9344395	9348268	+
GWHAAZE00000005	mRNA	9344395	9348268	+
GWHAAZE00000005	exon	9344395	9344497	+
GWHAAZE00000005	exon	9344607	9345163	+
GWHAAZE00000005	exon	9346338	9346835	+
GWHAAZE00000005	exon	9346939	9347004	+
GWHAAZE00000005	exon	9347070	9347236	+
GWHAAZE00000005	exon	9347371	9347420	+
GWHAAZE00000005	exon	9347566	9347708	+
GWHAAZE00000005	exon	9348083	9348268	+
GWHAAZE00000005	CDS	9344395	9344497	+
GWHAAZE00000005	CDS	9344607	9345163	+
GWHAAZE00000005	CDS	9346338	9346835	+
GWHAAZE00000005	CDS	9346939	9347004	+
GWHAAZE00000005	CDS	9347070	9347236	+
GWHAAZE00000005	CDS	9347371	9347420	+
GWHAAZE00000005	CDS	9347566	9347708	+
GWHAAZE00000005	CDS	9348083	9348268	+

Transcript Sequence
>GWHTAAZE017683 ATGGAGAACTCACATTCACAGGATCCGAATCCGAATTTAAAACAACAACCGCTTCCCGCCGACGACCACGACCTCGACCTCTACACCATCCCCAGCTACTCAAGTTGGTTTTCATGGAATGATATCCACGAAATTGAGAAACTCTACCTCAAAGAATTCTTCGATGGAAGTTCAATCACAAGATCACCCAAGATATACAGGGAGTACAGAGATTTCATTATTTCCAAGTACAGAGAAGATCCTTCAAGAAGACTTACCTTCACGGAGGTGCGTAAGTCACTCGTCGGTGACCTTACTTATCTCCAAAAGGTGTTCTGGTTTCTTGAGCGATGGGGTTTGATTAATTTTGGTGCACCTTTGATTGAGGAAGAGGATTGGATAGGGAAGGAGGAGGACAGGTTGAAAGTGAAGGTGGAGGATGGGGCTCCTATGGGGGTTAGGGTTGTGGCTGTACCGGGGTCGTTGAAGCCGGTTTCTGTGCCGAATGTCATATCATCGGTTGGGAGTTGTAACGGGGATGTGGTTGATACTGGATTTCAATTGCCTCCGTTGTCGTCTTATTCTGATGTTTACAGTGAGTTGATGCAGAAGAAGAAGGGATTGGTGTGTGGGAATTGTAAAGAGGGGTGTGATTCTGGACATTATTATGAATATACAAAGGAGAGAAGCTTCATAATTTGTGTAAAGTGCTTCAAAAATGAAGATTACAGGGAGAACAAGTCTGCAGATGATTTCAAGTTAATTGAATACATCCCAAACAAAGAGAATCAGGGAGCTGTATGGACTGAAGCAGAAACATTACTCCTTTTAGAATCCGTTTTGAAGCATGGAGATGACTGGGAGCTTGTTTCTCAAAATGTTCAAACAAAGAGCAAACTTGATTGCATCTCAAAGCTTATAGAGCTGCCTTTTGGGGAGCTTATGCTGGGGTCTGTCCACAATAAGAGTCAATTGCGGGATACAAAGAACAACATAACCAATGCCAAACACACACTGCTAGCTTCAACCGAGTCCCTAGAGACTACAAAAATAGAGGACCGCTGCCTTGAGTTTAAGAACGATAGGAATCAGAATGGAGATGCTGAGGATCAGGGTCCTCCTCTAAAGAGGGCCCGCAATGCACCAATCTCAGATGCCACTAGTTCACTGATGAGACAGATTTTTGCAATTCTTGTTGAAAGTTTTGTTTTACTTTGTTCATTAGTCCTGTTGCATGATTTCAAGGTTTCTCTCATATCTACCATGGTTGGCCCACGTATCACAGCTTCTGCATCTGAGGCTGCTGTCACAGCCATTTGCTATGAAAACCTATGTCCAAGGGAAATGTTCGATGGTGTTGATATTGTTGGAGATGAAAAAGAACCATCCCCTCAAAATGAGGAGGGAGAAAGCGCGCCGCCGGTCAAAGATTCCGAGTTGGAAGAAATGCACTCTCAGTCAGAAAGTCAAGAGATACCTTTGACTTTACGAATGAGGGCTGCATCTGCTACAGCTCTTGGCGCTGCTGCTGCTCGTGCCAAGTTATTGGCAGATCGGGAAGATAGAGAAATAGAGCATTTAGTGGCAACCATAATTGAGATGCAGTTGAAGAAACTGAAATACAAAATGAAGCATATTGAAGATCTGGAAGTGATAATGGAGAAGGAACGCGAGCAGATGGAGAAAGTGGAAGAATCCATCCTAGAAGAGAGAATGAATGTCTTACAAAGGATATTTAATGCAGGTATATCTAGATGGAGGGATCATACTTCTGTAAAGATTGTTCTTTGA

Network for GWHGAAZE017663

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04433.18	SWIRM	31	116	1.20E-25
PF00249.32	Myb_DNA-binding	261	299	2.90E-09
PF16495.6	SWIRM-assoc_1	497	571	1.10E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11649	SMARCC	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.007
	SRR3591706	second leaf	4.985
	SRR3591707	mature leaf	6.848
	SRR3591708	Shoot apex	11.206
	SRR3591709	Stem	5.458
	SRR3591710	White floral bud	6.893
	SRR3591711	White flower	9.566
	SRR3591712	Green floral bud	6.348
	SRR3591713	Yellow flower	5.845
SRP173429	SRR8316895	Juvenile bud stage	5.792
	SRR8316896	Juvenile bud stage	8.632
	SRR8316897	Juvenile bud stage	5.738
	SRR8316894	Third green stage	2.811
	SRR8316900	Third green stage	7.374
	SRR8316901	Third green stage	7.452
	SRR8316898	Complete white stage	3.241
	SRR8316899	Complete white stage	10.411
	SRR8316903	Complete white stage	4.348
	SRR8316902	Silver flowering stage	3.833
	SRR8316904	Silver flowering stage	5.451
	SRR8316905	Silver flowering stage	2.557
	SRR8316906	Gold flowering stage	6.809
	SRR8316907	Gold flowering stage	8.220
	SRR8316908	Gold flowering stage	9.114
SRP132670	SRR6706286	Control	6.483
	SRR6706287	Light intensity 50%	7.526
	SRR6706288	Light intensity 20%	6.847
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.462
	CNS0095593	Slightly white alabastrum(diploid) 2	6.029
	CNS0095594	Slightly white alabastrum(diploid) 3	5.899
	CNS0095595	Whole white alabastrum(diploid) 2	4.554
	CNS0095596	Whole white alabastrum(diploid) 3	4.344
	CNS0095597	Whole white alabastrum(diploid) 4	4.141
	CNS0095598	Silvery flower (diploied) 1	7.084
	CNS0095599	Silvery flower (diploied) 2	9.308
	CNS0095600	Silvery flower (diploied) 3	6.287
	CNS0095601	Golden flower (diploid) 1	4.587
	CNS0095602	Golden flower (diploid) 2	4.679
	CNS0095603	Golden flower (diploid) 3	5.056
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.069
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.812
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.736
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.436
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.651
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.537
	CNS0095610	Silvery flower (tetraploid) 1	9.052
	CNS0095611	Silvery flower (tetraploid) 2	7.024
	CNS0095612	Silvery flower (tetraploid) 3	5.691
	CNS0095613	Golden flower (tetraploid) 1	5.508
	CNS0095614	Golden flower (tetraploid) 2	6.614
	CNS0095615	Golden flower (tetraploid) 3	2.780
CRA001975	CRR073297	Stem 1	10.598
	CRR073298	Stem 2	8.360
	CRR073299	Stem 3	6.212
	CRR073300	Leaf 1	8.408
	CRR073301	Leaf 2	9.122
	CRR073302	Leaf 3	6.410
	CRR073303	Juvenile bud 1	7.379
	CRR073304	Juvenile bud 2	6.197
	CRR073305	Juvenile bud 3	6.345
	CRR073306	Third green 1	1.695
	CRR073307	Third green 2	1.702
	CRR073308	Third green 3	1.351
	CRR073309	Second white 1	1.122
	CRR073310	Second white 2	2.002
	CRR073311	Second white 3	1.619
	CRR073312	Silver flowering 1	0.997
	CRR073313	Silver flowering 2	0.395
	CRR073314	Silver flowering 3	0.784
	CRR073315	Gold flowering 1	7.908
	CRR073316	Gold flowering 2	9.519
	CRR073317	Gold flowering 3	2.475
	CRR073318	Tawny withering 1	5.871
	CRR073319	Tawny withering 2	7.152
	CRR073320	Tawny withering 3	7.366