Gene detail

Detail information of GWHGAAZE017669

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006436872.1	0	hypothetical protein CICLE_v10033661mg [Citrus clementina]
Swissprot	tr\|O04300\|UPTG_PEA	0	Alpha-1,4-glucan-protein synthase [UDP-forming]
trEMBL	tr\|V4TA21\|V4TA21_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR50112.1}
TAIR10	AT3G02230.1	1E-170	reversibly glycosylated polypeptide 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	9444365	9447993	+
GWHAAZE00000005	mRNA	9444365	9447993	+
GWHAAZE00000005	exon	9444365	9444598	+
GWHAAZE00000005	exon	9446718	9446968	+
GWHAAZE00000005	exon	9447156	9447324	+
GWHAAZE00000005	exon	9447679	9447993	+
GWHAAZE00000005	CDS	9444365	9444598	+
GWHAAZE00000005	CDS	9446718	9446968	+
GWHAAZE00000005	CDS	9447156	9447324	+
GWHAAZE00000005	CDS	9447679	9447993	+

Transcript Sequence
>GWHTAAZE017689 ATGTGGAGGCCTTTCTTCGAACAGTACCACCTCATCATAGTCCAAGACGGAGATCCCACTAAGAAGATCCATGTCCCCCAAGGTTTCGATTACGAGCTTTACAATCGCAACGATATCAATCGGATCCTCGGTCCTAAGGCCAATTGCATCTCCTTTAAGGACTCTGCTTGTCGGTGCTTTGGATTCATGGTATCCAAGAAGAAGTACATTTTCACCATTGATGACGATTGCTTCGTTGCCAAGGATCCGACTGGTGAAGAGATAAATGCTTTGGCGCAGCACATAAGTAACCTGCTGACACCCTCAACCCCTTTCTTCTTCAATACCCTTTATGATCCCTACGTCGAGGGTACTGATTTTGTCCGTGGCTACCCTTTTAGCATGAGGGAAGGTGTACCAACTGCCATCTCTCACGGTCTCTGGCTCAATATCCCCGACTATGATGCCCCTACTCAGCTTGTCAAGCCTCGAGAGCGCAACACCAGGTATGTGGATCTTGTGATGACAATTCCCAAAGGCACCTTGTTCCCAATGTGTGGGATGAACCTTGGATTCAACAGGGAACTGATTGGCCCGGCCATGTATTTTGGTCTTATGGGCGATGGCCAACCTATTGGAAGGTATGATGATATGTGGGCTGGCTGGTGTACCAAGGTGATATGCGACCATTTGAGTCTTGGTGTGAAGACAGGGCTGCCATATATTTGGCACAGTAAAGCGAGCAACCCGTTTGTGAACTTGAAGAAGGAATACAAGGGTATCTACTGGCAAGAGGAGATCATCCCATTCTTCCAATCTGTTGTCCTCCCAAAAGAATGCACGACGGTGCAGAAATGCTACCTTGAGCTCTCAAAGCTTGTGAAGGAGAAGCTGGGCCCCATCGATCCCTACTTTGAGAAGCTTGGCGATGCCATGGTTACTTGGATCGATGCTTGGGATGAGCTCAACCCTACCACCACCAGTGTCTAA

Network for GWHGAAZE017669

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03214.14	RGP	1	316	1.40E-169

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13379	RGP, UTM	Metabolic pathways	map01100
K13379	RGP, UTM	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0071669	biological_process	plant-type cell wall organization or biogenesis
GO:0016866	molecular_function	intramolecular transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	295.432
	SRR3591706	second leaf	135.858
	SRR3591707	mature leaf	67.561
	SRR3591708	Shoot apex	168.887
	SRR3591709	Stem	197.887
	SRR3591710	White floral bud	201.789
	SRR3591711	White flower	179.757
	SRR3591712	Green floral bud	311.354
	SRR3591713	Yellow flower	118.321
SRP173429	SRR8316895	Juvenile bud stage	180.501
	SRR8316896	Juvenile bud stage	191.249
	SRR8316897	Juvenile bud stage	127.843
	SRR8316894	Third green stage	81.663
	SRR8316900	Third green stage	243.855
	SRR8316901	Third green stage	268.782
	SRR8316898	Complete white stage	122.450
	SRR8316899	Complete white stage	390.476
	SRR8316903	Complete white stage	170.821
	SRR8316902	Silver flowering stage	72.419
	SRR8316904	Silver flowering stage	97.670
	SRR8316905	Silver flowering stage	48.051
	SRR8316906	Gold flowering stage	126.304
	SRR8316907	Gold flowering stage	126.672
	SRR8316908	Gold flowering stage	179.829
SRP132670	SRR6706286	Control	250.418
	SRR6706287	Light intensity 50%	288.985
	SRR6706288	Light intensity 20%	307.002
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	232.468
	CNS0095593	Slightly white alabastrum(diploid) 2	264.126
	CNS0095594	Slightly white alabastrum(diploid) 3	200.633
	CNS0095595	Whole white alabastrum(diploid) 2	212.624
	CNS0095596	Whole white alabastrum(diploid) 3	173.103
	CNS0095597	Whole white alabastrum(diploid) 4	196.028
	CNS0095598	Silvery flower (diploied) 1	213.945
	CNS0095599	Silvery flower (diploied) 2	183.144
	CNS0095600	Silvery flower (diploied) 3	182.014
	CNS0095601	Golden flower (diploid) 1	154.897
	CNS0095602	Golden flower (diploid) 2	199.564
	CNS0095603	Golden flower (diploid) 3	198.792
	CNS0095604	Slightly white alabastrum(tetraploid) 1	132.602
	CNS0095605	Slightly white alabastrum(tetraploid) 2	125.175
	CNS0095606	Slightly white alabastrum(tetraploid) 3	221.745
	CNS0095607	Whole white alabastrum(tetraploid) 1	82.978
	CNS0095608	Whole white alabastrum(tetraploid) 2	83.095
	CNS0095609	Whole white alabastrum(tetraploid) 3	161.477
	CNS0095610	Silvery flower (tetraploid) 1	147.444
	CNS0095611	Silvery flower (tetraploid) 2	137.493
	CNS0095612	Silvery flower (tetraploid) 3	94.376
	CNS0095613	Golden flower (tetraploid) 1	113.261
	CNS0095614	Golden flower (tetraploid) 2	131.314
	CNS0095615	Golden flower (tetraploid) 3	53.470
CRA001975	CRR073297	Stem 1	342.484
	CRR073298	Stem 2	329.885
	CRR073299	Stem 3	339.702
	CRR073300	Leaf 1	382.663
	CRR073301	Leaf 2	476.117
	CRR073302	Leaf 3	448.632
	CRR073303	Juvenile bud 1	479.764
	CRR073304	Juvenile bud 2	555.675
	CRR073305	Juvenile bud 3	506.482
	CRR073306	Third green 1	159.646
	CRR073307	Third green 2	155.814
	CRR073308	Third green 3	155.222
	CRR073309	Second white 1	164.245
	CRR073310	Second white 2	67.780
	CRR073311	Second white 3	43.362
	CRR073312	Silver flowering 1	91.861
	CRR073313	Silver flowering 2	137.946
	CRR073314	Silver flowering 3	98.943
	CRR073315	Gold flowering 1	232.303
	CRR073316	Gold flowering 2	289.884
	CRR073317	Gold flowering 3	285.660
	CRR073318	Tawny withering 1	560.454
	CRR073319	Tawny withering 2	508.631
	CRR073320	Tawny withering 3	529.171