Gene detail

Detail information of GWHGAAZE017671

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007038017.1	6.19131E-77	Squamosa promoter-binding protein isoform 1 [Theobroma cacao]
Swissprot	tr\|P0DI11\|SP13B_ARATH	2E-52	Squamosa promoter-binding-like protein 13B
trEMBL	tr\|A0A061G652\|A0A061G652_THECC	2E-77	Squamosa promoter-binding protein isoform 1 {ECO:0000313\|EMBL:EOY22519.1}
TAIR10	AT5G50570.2	7E-46	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	9465585	9467829	+
GWHAAZE00000005	mRNA	9465585	9467829	+
GWHAAZE00000005	exon	9465585	9466041	+
GWHAAZE00000005	exon	9466407	9466506	+
GWHAAZE00000005	exon	9467062	9467195	+
GWHAAZE00000005	exon	9467294	9467829	+
GWHAAZE00000005	CDS	9465585	9466041	+
GWHAAZE00000005	CDS	9466407	9466506	+
GWHAAZE00000005	CDS	9467062	9467195	+
GWHAAZE00000005	CDS	9467294	9467829	+

Transcript Sequence
>GWHTAAZE017691 ATGGAATGGAACTTGAGGGCACCTTCTTGGGATTTAACACAATTTGAACAAGAAACAATACCTAATATTGATGGTGTTAATGGGTTGAATTGCTTTGGGCCTGAGGGGATTAAAAAGGGTGATTTTTGTGTAGATTTGAAGCTTGGTCAAGTGATTATTGATTCAGGCAGTGAGTTGGGTGACAATTTGAAGGTTCCAAAAATGGCATTATCACCTTCGGGATCATCGAAGAGGCCACGATCCATTAATAGTAATGGAGTTCACGCGGCTTCCTGTCTAGTAGACGGGTGCATTGCAGACCTTAGTAACTGCAGAGAGTATCACAGGCGCCATAAGGTCTGTGAACTCCATTCTAAGACTCCACAGGTTATGATTAACGGCCACAAGCAACGGTTCTGCCAGCAATGCAGCAGGTACAAGTTTCAATGGATTGTCACTAGCTGTTCTCGAGATTGCTACGGATTTAAACGCAGAGGGTTGTCAATTACAGTAGTGTGTGATGAGGTAGATTGGCTCACCGATGTGAAAGGCGGAAAGGAAATAGAGCTAGGAGAAATGTTCCATTCACCGGAGGAATTTGACGAGGGAAAAAGAAGCTGCAGGAAGCGTCTCGATGGACATAACCGTAGGAGAAGAAAGCCTCAACCGATACCTCTCTCACGTTCTTCAAGTTTCTTCTCTACTACCCAAGTGCTACTTATTGTTTCAGGAGCCAGTTTGATGCCATTCTGTACTCCACAAGTCTATCCAACTACTGCTATGGGGAACTCGTTCTGGGCCGGAATTGTTAGAGCCAATGAAGAAAATACTAATCACTCTATTATGCATCCAGCAAACAAGCAAAAACAAACCCCTGATTCTGCCTTTAGCACCCATAGAAAAGAGATGGAATTCAGTTTCTTGAACAGCACCAACCTTAAACTCGGCAACCAAACAGCTCTAAGCAGTGGAGGCATCCATTCGGATTGTGTTCTCTCTCTTCTGTCATCATCATCATCGTCACCCATTCAGACATCTGGTGTCAGTCTGAACGACGTGATGGGGCCTGACTCATTGCCAACAGCACGGCCCGTAGATCCGAGTCCTAGCTATAGTGCTATAGAGCCGATGGAGGCTATCCTGGTTCCTAATGCAAATGCACATTTCCAAGAAATAATGCTCCATGTGGAGCCACGTGCGGGTCGGGACAGTGAAGCCCCTCAAACACTTCCATTCTATTGGGAATAG

Network for GWHGAAZE017671

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03110.15	SBP	92	140	8.20E-16
PF03110.15	SBP	186	213	1.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.263
	SRR3591706	second leaf	7.200
	SRR3591707	mature leaf	0.208
	SRR3591708	Shoot apex	17.806
	SRR3591709	Stem	4.210
	SRR3591710	White floral bud	0.427
	SRR3591711	White flower	0.621
	SRR3591712	Green floral bud	10.789
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	8.479
	SRR8316896	Juvenile bud stage	7.843
	SRR8316897	Juvenile bud stage	3.190
	SRR8316894	Third green stage	3.217
	SRR8316900	Third green stage	9.035
	SRR8316901	Third green stage	6.686
	SRR8316898	Complete white stage	0.151
	SRR8316899	Complete white stage	2.659
	SRR8316903	Complete white stage	0.210
	SRR8316902	Silver flowering stage	0.060
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	4.918
	SRR6706287	Light intensity 50%	5.533
	SRR6706288	Light intensity 20%	6.687
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.283
	CNS0095593	Slightly white alabastrum(diploid) 2	3.133
	CNS0095594	Slightly white alabastrum(diploid) 3	2.534
	CNS0095595	Whole white alabastrum(diploid) 2	1.920
	CNS0095596	Whole white alabastrum(diploid) 3	3.899
	CNS0095597	Whole white alabastrum(diploid) 4	1.775
	CNS0095598	Silvery flower (diploied) 1	0.713
	CNS0095599	Silvery flower (diploied) 2	0.480
	CNS0095600	Silvery flower (diploied) 3	0.197
	CNS0095601	Golden flower (diploid) 1	0.233
	CNS0095602	Golden flower (diploid) 2	0.089
	CNS0095603	Golden flower (diploid) 3	0.178
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.758
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.359
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.557
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.657
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.172
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.780
	CNS0095610	Silvery flower (tetraploid) 1	0.043
	CNS0095611	Silvery flower (tetraploid) 2	0.217
	CNS0095612	Silvery flower (tetraploid) 3	0.104
	CNS0095613	Golden flower (tetraploid) 1	0.149
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	16.457
	CRR073298	Stem 2	15.541
	CRR073299	Stem 3	15.854
	CRR073300	Leaf 1	11.170
	CRR073301	Leaf 2	10.867
	CRR073302	Leaf 3	12.576
	CRR073303	Juvenile bud 1	4.021
	CRR073304	Juvenile bud 2	0.857
	CRR073305	Juvenile bud 3	4.192
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.073
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.037
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.057
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.347
	CRR073318	Tawny withering 1	0.404
	CRR073319	Tawny withering 2	0.340
	CRR073320	Tawny withering 3	0.347