Gene detail

Detail information of GWHGAAZE017678

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002511167.1	Phospholipase C 4 precursor, putative [Ricinus communis]
Swissprot	tr\|Q8H965\|NPC6_ARATH	Non-specific phospholipase C6 (Precursor)
trEMBL	tr\|B9RAE2\|B9RAE2_RICCO	Phospholipase C 4, putative {ECO:0000313\|EMBL:EEF51769.1}
TAIR10	AT3G48610.1	non-specific phospholipase C6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	9529825	9531941	+
GWHAAZE00000005	mRNA	9529825	9531941	+
GWHAAZE00000005	exon	9529825	9530929	+
GWHAAZE00000005	exon	9531326	9531502	+
GWHAAZE00000005	exon	9531643	9531941	+
GWHAAZE00000005	CDS	9529825	9530929	+
GWHAAZE00000005	CDS	9531326	9531502	+
GWHAAZE00000005	CDS	9531643	9531941	+

Transcript Sequence
>GWHTAAZE017698 ATGGCAAGATTTAGAAACAGAGCACCTCCATTTTCCTTCCTCTTCTCTCTCTTCCTCACTCTTTCCCCTGCTTTCCATCCCCTTTCCACTGTAAATGCAACTGACCAACAACACCCAATCAAAACCATTGTTGTTCTGGTTTTGGAGAACAGATCTTTTGATCACATGATTGGGTGGATGAAGAACTCCATTAACCCATCAATCAATGGTGTAACGGGTCGGGAGTGCAACCCGGTTTCAACCAAGTCAGTGACCCGACAAACAGAATCAATTTGCTTCTCAAATGATGCAGAGTATGTGGATCCGGATCCGGGTCACTCCTTTGAAGATGTGGAGCAACAGGTATTTGGGTCTGGTTCCATTCCTTCAATGTCTGGGTTTGTAGAACAAGCACTTTCAATGTCACAAAACCTCTCACAAACAGTAATGAAAGGATTCAAACCCGAAAATGTTCCCGTTTTCGCTAAATTAGTAAGCGAATTCGCGGTTTTCGATAGGTGGTTCTCATCAATTCCAGGTCCGACCCAACCCAATAGGCTGTTTGTGTATTCAGCAACATCACACGGATCCACAAGCCATGTGAAGAAACAATTGGCCAAAGGATACCCACAAAAGACCATATTTGATTCACTACATGAGAATAAATTGAGCTTTGGTATCTATTTTCAGAACATACCCACAACATTGTTTTACAGAAATTTGAGGAAATTGAAGTATATATGGAAGTTCCATGAATTTGATTTGAAGTTCAAGAGAGATGCAAGAAATGGGAAGTTGCCTAATTTGAGTGTTATAGAGCCAAGGTACTTTGATATTACGGGGATACCAGCAAATGATGATCACCCATCACATGATGTTGCTAATGGGCAAATGCTAGTGAAGGAGGTTTACGAGGCATTGAGATCTAGCCCACAGTGGAATGAGAGTCTTTTGGTGATTACTTATGATGAACATGGTGGGTTTTATGATCATGTGCAGACTCCTTATGTTAATGTACCCAGCCCAGATGGAAACACTGGACCTGCTCCTTCTTTCTTTAAGTTCGATCGGCTCGGCGTGAGGGTCCCTACTATAATGGTCTCTCCTTGGATCAAGAAAGGAACTGTGATAACCAGACCAAAAGGACCTGCTCCAAATTCGGAATTTGAACACTCCTCAATCCCAGCAACCATAAAGAAAATGTTCAACCTCTCTTCCAACTTCTTAACTCACAGAGACGCGTGGGCTGGCACATTCGAACATGTTGTTGGCCAACTTACCTCTCCCAGAACCGATTGCCCAGTGGTTCTGCCAGATGCGGCTGCTTTAAGAAAAACTGAGGTGGATGAAGGACGGAAGTTGTCGGAGTTTCAAAGTGAGGTAGTTCAATTAGCAGCGGTTCTTAATGGGGACCACTTCTTAAGTAGCTTTCCGGATGAGATGAGCAAGAAAATGACGGTAAAGGAAGGTCACGAGTATGTGAAGGGGGCGGTGTCGAGGTTCATTACAGCGAGTAAAGAAGCCATAAACTTGGGTGCTGATGAGTCAGCCATTGTTGACATGAGGTCTTCTCTTACTACCAGATCATCCATCCACCGTTAA

Network for GWHGAAZE017678

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0162

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04185.15	Phosphoesterase	40	397	3.70E-106

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01114	plc	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Inositol phosphate metabolism	map00562
		Glycerophospholipid metabolism	map00564
		Ether lipid metabolism	map00565
		Quorum sensing	map02024
		Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0016788	molecular_function	hydrolase activity, acting on ester bonds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	70.244
	SRR3591706	second leaf	24.091
	SRR3591707	mature leaf	15.241
	SRR3591708	Shoot apex	19.619
	SRR3591709	Stem	25.396
	SRR3591710	White floral bud	31.629
	SRR3591711	White flower	11.405
	SRR3591712	Green floral bud	65.333
	SRR3591713	Yellow flower	4.819
SRP173429	SRR8316895	Juvenile bud stage	5.710
	SRR8316896	Juvenile bud stage	7.474
	SRR8316897	Juvenile bud stage	3.931
	SRR8316894	Third green stage	7.506
	SRR8316900	Third green stage	33.528
	SRR8316901	Third green stage	27.607
	SRR8316898	Complete white stage	8.520
	SRR8316899	Complete white stage	32.392
	SRR8316903	Complete white stage	15.900
	SRR8316902	Silver flowering stage	0.819
	SRR8316904	Silver flowering stage	3.374
	SRR8316905	Silver flowering stage	0.802
	SRR8316906	Gold flowering stage	0.531
	SRR8316907	Gold flowering stage	0.669
	SRR8316908	Gold flowering stage	0.936
SRP132670	SRR6706286	Control	25.812
	SRR6706287	Light intensity 50%	26.354
	SRR6706288	Light intensity 20%	29.243
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.668
	CNS0095593	Slightly white alabastrum(diploid) 2	20.290
	CNS0095594	Slightly white alabastrum(diploid) 3	6.725
	CNS0095595	Whole white alabastrum(diploid) 2	20.488
	CNS0095596	Whole white alabastrum(diploid) 3	19.816
	CNS0095597	Whole white alabastrum(diploid) 4	18.107
	CNS0095598	Silvery flower (diploied) 1	13.106
	CNS0095599	Silvery flower (diploied) 2	10.027
	CNS0095600	Silvery flower (diploied) 3	5.855
	CNS0095601	Golden flower (diploid) 1	8.910
	CNS0095602	Golden flower (diploid) 2	7.533
	CNS0095603	Golden flower (diploid) 3	7.273
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.684
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.489
	CNS0095606	Slightly white alabastrum(tetraploid) 3	52.162
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.141
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.296
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.099
	CNS0095610	Silvery flower (tetraploid) 1	5.950
	CNS0095611	Silvery flower (tetraploid) 2	5.638
	CNS0095612	Silvery flower (tetraploid) 3	4.177
	CNS0095613	Golden flower (tetraploid) 1	0.162
	CNS0095614	Golden flower (tetraploid) 2	2.883
	CNS0095615	Golden flower (tetraploid) 3	1.414
CRA001975	CRR073297	Stem 1	23.662
	CRR073298	Stem 2	23.937
	CRR073299	Stem 3	27.406
	CRR073300	Leaf 1	56.637
	CRR073301	Leaf 2	45.870
	CRR073302	Leaf 3	37.484
	CRR073303	Juvenile bud 1	50.429
	CRR073304	Juvenile bud 2	34.866
	CRR073305	Juvenile bud 3	57.296
	CRR073306	Third green 1	8.050
	CRR073307	Third green 2	8.919
	CRR073308	Third green 3	12.746
	CRR073309	Second white 1	0.623
	CRR073310	Second white 2	1.076
	CRR073311	Second white 3	0.169
	CRR073312	Silver flowering 1	0.085
	CRR073313	Silver flowering 2	0.034
	CRR073314	Silver flowering 3	0.101
	CRR073315	Gold flowering 1	14.217
	CRR073316	Gold flowering 2	15.324
	CRR073317	Gold flowering 3	15.664
	CRR073318	Tawny withering 1	37.724
	CRR073319	Tawny withering 2	22.588
	CRR073320	Tawny withering 3	36.636