Gene detail

Detail information of GWHGAAZE017685

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283797.1	0	PREDICTED: ubiquitin-like modifier-activating enzyme 5 [Vitis vinifera]
Swissprot	tr\|O23034\|UBA5_ARATH	0	Ubiquitin-like modifier-activating enzyme 5
trEMBL	tr\|D7SGY8\|D7SGY8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15668.3}
TAIR10	AT1G05350.1	2E-173	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	9623733	9630387	-
GWHAAZE00000005	mRNA	9623733	9630387	-
GWHAAZE00000005	exon	9623733	9623875	-
GWHAAZE00000005	exon	9624614	9624660	-
GWHAAZE00000005	exon	9624929	9625044	-
GWHAAZE00000005	exon	9625146	9625232	-
GWHAAZE00000005	exon	9625826	9625900	-
GWHAAZE00000005	exon	9626340	9626414	-
GWHAAZE00000005	exon	9627161	9627243	-
GWHAAZE00000005	exon	9627562	9627598	-
GWHAAZE00000005	exon	9627752	9627904	-
GWHAAZE00000005	exon	9628475	9628543	-
GWHAAZE00000005	exon	9628824	9628952	-
GWHAAZE00000005	exon	9629900	9630013	-
GWHAAZE00000005	exon	9630113	9630181	-
GWHAAZE00000005	exon	9630298	9630387	-
GWHAAZE00000005	CDS	9630298	9630387	-
GWHAAZE00000005	CDS	9630113	9630181	-
GWHAAZE00000005	CDS	9629900	9630013	-
GWHAAZE00000005	CDS	9628824	9628952	-
GWHAAZE00000005	CDS	9628475	9628543	-
GWHAAZE00000005	CDS	9627752	9627904	-
GWHAAZE00000005	CDS	9627562	9627598	-
GWHAAZE00000005	CDS	9627161	9627243	-
GWHAAZE00000005	CDS	9626340	9626414	-
GWHAAZE00000005	CDS	9625826	9625900	-
GWHAAZE00000005	CDS	9625146	9625232	-
GWHAAZE00000005	CDS	9624929	9625044	-
GWHAAZE00000005	CDS	9624614	9624660	-
GWHAAZE00000005	CDS	9623733	9623875	-

Transcript Sequence
>GWHTAAZE017705 ATGGAGGTGGAGCTAAAAGAGATGCTAAGTGATCTCGAAGCTCTTAAACGATCGCTTCCAGATTCTTCCCTTCACTCTTCCATCGATAAAATGAAATTGCGTATCGAGTACCTCACCACTCTTGAAAATTCTGGACCTGTTCGCCGCACCAAACTCAAGGATATGAGTGCTGAGGTGGTTGATAGTAATCCTTACAGTAGGCTAATGGCACTTCAGAGGATGGGGATTGTGGACAATTATGAAAGGATACGGGAATTCTCAGTTGCCATAGTTGGTATTGGTGGCGTAGGTAGTGTTGCAGCTGAGATGCTAACAAGGTGTGGCATAGGTCGCCTTTTGTTATATGATTATGACACAGTGGAATTAGCTAACATGAATAGGCTATTTTTTCGCCCAGAGCAGGTTGGTATGACAAAGACTGATGCTGCTGTTCAAACTCTTTCAGACATAAATCCAGATGTTGTCCTTGAGAGCTATACATTGAACATCACAACAGTGCAAGGATTTGAAACTTTCATGGAAAGTCTCAGAAATAAAGCATATCGCCCAAATAAAGAAGGTAGCGGAGTTGATCTTGTTTTGAGTTGCGTTGATAATTATGAAGCAAGGATGGTAGTAAATCAGGCTTGTAATGAGATGAATCAAACGTGGATGGAATCTGGTGTGTCTGAGGATGCTGTATCAGGTCATATACAATTGCTGATTCCTGGAGAGACGGCATGTTTTGCATGTGCGCCTCCCTTGGTTGTAGCATCTGGAATAGATGAGCGAACACTTAAGCGTGAAGGGGTTTGCGCTGCCTCTTTACCCACTACTATGGGGGTTGTTGCTGGGATTCTAGTCCAAAACACACTTAAATATTTGCTTAAGTTCGGGAATGTCTCCCCGTACTTGGGATATAATGCACTCAAAGACTACTTCCCGACTATGGAAATGAAGCCAAACCCTCAATGTTCAAATGGAGCTTGCCTGGAACGACAGAAAGAATACATTCTCGCAAAACCTGATAGGGACGCTGCCTCTAAAGCTAAGAGGGTGACAGAAGCATTATCAGCGACAGTGTGCCCCACTCATGAAGATAATGAATGGAACATATGCGTTGTCGATGACAGCGAGGTGGATGGCACAGCTGCAAAAACTTCAGGTATGCTCCCGGAAGGTCTTGTTCATGAGCTTCCTAGTGCTGATACGTTCCAAATACAACCTCCTTCCGAAGAGACTGCTAACAATGTTGTTGATGACCTTGAAGATCTAAGAAGACAATTGGATGCCCTTAATGCTCCCTAG

Network for GWHGAAZE017685

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00899.22	ThiF	65	318	1.50E-50

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ThiF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008641	molecular_function	ubiquitin-like modifier activating enzyme activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	71.246
	SRR3591706	second leaf	43.527
	SRR3591707	mature leaf	32.115
	SRR3591708	Shoot apex	69.839
	SRR3591709	Stem	67.877
	SRR3591710	White floral bud	65.095
	SRR3591711	White flower	75.999
	SRR3591712	Green floral bud	64.884
	SRR3591713	Yellow flower	69.796
SRP173429	SRR8316895	Juvenile bud stage	37.232
	SRR8316896	Juvenile bud stage	48.808
	SRR8316897	Juvenile bud stage	25.207
	SRR8316894	Third green stage	20.412
	SRR8316900	Third green stage	54.784
	SRR8316901	Third green stage	49.357
	SRR8316898	Complete white stage	24.169
	SRR8316899	Complete white stage	73.262
	SRR8316903	Complete white stage	33.930
	SRR8316902	Silver flowering stage	27.248
	SRR8316904	Silver flowering stage	32.412
	SRR8316905	Silver flowering stage	14.267
	SRR8316906	Gold flowering stage	49.838
	SRR8316907	Gold flowering stage	46.186
	SRR8316908	Gold flowering stage	57.594
SRP132670	SRR6706286	Control	49.492
	SRR6706287	Light intensity 50%	55.828
	SRR6706288	Light intensity 20%	59.393
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.649
	CNS0095593	Slightly white alabastrum(diploid) 2	40.158
	CNS0095594	Slightly white alabastrum(diploid) 3	32.221
	CNS0095595	Whole white alabastrum(diploid) 2	36.919
	CNS0095596	Whole white alabastrum(diploid) 3	30.286
	CNS0095597	Whole white alabastrum(diploid) 4	27.548
	CNS0095598	Silvery flower (diploied) 1	40.026
	CNS0095599	Silvery flower (diploied) 2	41.680
	CNS0095600	Silvery flower (diploied) 3	36.668
	CNS0095601	Golden flower (diploid) 1	37.122
	CNS0095602	Golden flower (diploid) 2	35.866
	CNS0095603	Golden flower (diploid) 3	33.647
	CNS0095604	Slightly white alabastrum(tetraploid) 1	42.178
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.146
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.006
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.009
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.218
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.332
	CNS0095610	Silvery flower (tetraploid) 1	45.662
	CNS0095611	Silvery flower (tetraploid) 2	32.345
	CNS0095612	Silvery flower (tetraploid) 3	34.756
	CNS0095613	Golden flower (tetraploid) 1	27.567
	CNS0095614	Golden flower (tetraploid) 2	34.794
	CNS0095615	Golden flower (tetraploid) 3	28.125
CRA001975	CRR073297	Stem 1	48.129
	CRR073298	Stem 2	43.132
	CRR073299	Stem 3	30.606
	CRR073300	Leaf 1	49.124
	CRR073301	Leaf 2	41.810
	CRR073302	Leaf 3	34.987
	CRR073303	Juvenile bud 1	33.589
	CRR073304	Juvenile bud 2	28.154
	CRR073305	Juvenile bud 3	34.346
	CRR073306	Third green 1	16.091
	CRR073307	Third green 2	16.852
	CRR073308	Third green 3	13.558
	CRR073309	Second white 1	14.581
	CRR073310	Second white 2	14.674
	CRR073311	Second white 3	14.570
	CRR073312	Silver flowering 1	12.982
	CRR073313	Silver flowering 2	12.768
	CRR073314	Silver flowering 3	13.946
	CRR073315	Gold flowering 1	13.670
	CRR073316	Gold flowering 2	19.859
	CRR073317	Gold flowering 3	10.606
	CRR073318	Tawny withering 1	38.225
	CRR073319	Tawny withering 2	30.059
	CRR073320	Tawny withering 3	26.871