Detail information of GWHGAAZE017692


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002513467.11.24416E-77ubiquitin-protein ligase, putative [Ricinus communis]
Swissprottr|Q9FZ52|FDL3_ARATH1E-15F-box/FBD/LRR-repeat protein At1g16930
trEMBLtr|B9RI98|B9RI98_RICCO5E-78Ubiquitin-protein ligase, putative {ECO:0000313|EMBL:EEF48870.1}
TAIR10AT1G32375.11E-12F-box/RNI-like/FBD-like domains-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene96999859702119-
GWHAAZE00000005mRNA96999859702119-
GWHAAZE00000005exon96999859700284-
GWHAAZE00000005exon97008819701024-
GWHAAZE00000005exon97011369702119-
GWHAAZE00000005CDS97011369702119-
GWHAAZE00000005CDS97008819701024-
GWHAAZE00000005CDS96999859700284-
Transcript Sequence

Network for GWHGAAZE017692

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08387.11FBD3924311.70E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE017692.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 30510152025303540Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.356
SRR3591706second leaf0.655
SRR3591707mature leaf3.641
SRR3591708Shoot apex1.789
SRR3591709Stem0.200
SRR3591710White floral bud21.991
SRR3591711White flower22.882
SRR3591712Green floral bud6.679
SRR3591713Yellow flower26.868
SRP173429 SRR8316895Juvenile bud stage 1.302
SRR8316896Juvenile bud stage 4.274
SRR8316897Juvenile bud stage 1.109
SRR8316894Third green stage 0.962
SRR8316900Third green stage 3.959
SRR8316901Third green stage 5.440
SRR8316898Complete white stage 7.598
SRR8316899Complete white stage 5.223
SRR8316903Complete white stage 9.496
SRR8316902Silver flowering stage9.596
SRR8316904Silver flowering stage12.023
SRR8316905Silver flowering stage4.869
SRR8316906Gold flowering stage 20.701
SRR8316907Gold flowering stage 21.064
SRR8316908Gold flowering stage 30.602
SRP132670SRR6706286Control2.040
SRR6706287Light intensity 50%3.024
SRR6706288Light intensity 20%2.627
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.012
CNS0095593Slightly white alabastrum(diploid) 21.886
CNS0095594Slightly white alabastrum(diploid) 32.909
CNS0095595Whole white alabastrum(diploid) 24.983
CNS0095596Whole white alabastrum(diploid) 36.017
CNS0095597Whole white alabastrum(diploid) 45.305
CNS0095598Silvery flower (diploied) 19.137
CNS0095599Silvery flower (diploied) 25.035
CNS0095600Silvery flower (diploied) 311.760
CNS0095601Golden flower (diploid) 16.123
CNS0095602Golden flower (diploid) 210.687
CNS0095603Golden flower (diploid) 39.487
CNS0095604Slightly white alabastrum(tetraploid) 15.548
CNS0095605Slightly white alabastrum(tetraploid) 24.950
CNS0095606Slightly white alabastrum(tetraploid) 33.871
CNS0095607Whole white alabastrum(tetraploid) 14.714
CNS0095608Whole white alabastrum(tetraploid) 26.046
CNS0095609Whole white alabastrum(tetraploid) 35.485
CNS0095610Silvery flower (tetraploid) 115.851
CNS0095611Silvery flower (tetraploid) 212.321
CNS0095612Silvery flower (tetraploid) 336.908
CNS0095613Golden flower (tetraploid) 114.571
CNS0095614Golden flower (tetraploid) 214.694
CNS0095615Golden flower (tetraploid) 317.738
CRA001975CRR073297Stem 12.995
CRR073298Stem 23.294
CRR073299Stem 32.692
CRR073300Leaf 13.476
CRR073301Leaf 22.012
CRR073302Leaf 32.844
CRR073303Juvenile bud 12.595
CRR073304Juvenile bud 25.693
CRR073305Juvenile bud 33.791
CRR073306Third green 16.197
CRR073307Third green 26.212
CRR073308Third green 37.386
CRR073309Second white 111.450
CRR073310Second white 210.858
CRR073311Second white 311.863
CRR073312Silver flowering 111.910
CRR073313Silver flowering 212.826
CRR073314Silver flowering 311.311
CRR073315Gold flowering 11.505
CRR073316Gold flowering 21.045
CRR073317Gold flowering 33.561
CRR073318Tawny withering 10.189
CRR073319Tawny withering 20.670
CRR073320Tawny withering 30.974