Detail information of GWHGAAZE017699


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002283698.13.6792E-104PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Vitis vinifera]
Swissprottr|P51413|RL172_ARATH2E-9560S ribosomal protein L17-2
trEMBLtr|D7SGX3|D7SGX3_VITVI3E-104Putative uncharacterized protein {ECO:0000313|EMBL:CBI15653.3}
TAIR10AT1G67430.11E-67Ribosomal protein L22p/L17e family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene97673269768474-
GWHAAZE00000005mRNA97673269768474-
GWHAAZE00000005exon97673269767428-
GWHAAZE00000005exon97675889767655-
GWHAAZE00000005exon97680289768130-
GWHAAZE00000005exon97682239768474-
GWHAAZE00000005CDS97682239768474-
GWHAAZE00000005CDS97680289768130-
GWHAAZE00000005CDS97675889767655-
GWHAAZE00000005CDS97673609767428-
GWHAAZE00000005three_prime_UTR97673269767359-
Transcript Sequence

Network for GWHGAAZE017699

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00237.20Ribosomal_L2271327.00E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02880RP-L17e, RPL17 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf121.435
SRR3591706second leaf56.768
SRR3591707mature leaf28.615
SRR3591708Shoot apex127.681
SRR3591709Stem72.421
SRR3591710White floral bud63.573
SRR3591711White flower85.450
SRR3591712Green floral bud136.855
SRR3591713Yellow flower54.966
SRP173429 SRR8316895Juvenile bud stage 110.394
SRR8316896Juvenile bud stage 154.425
SRR8316897Juvenile bud stage 88.281
SRR8316894Third green stage 57.174
SRR8316900Third green stage 215.698
SRR8316901Third green stage 198.129
SRR8316898Complete white stage 41.527
SRR8316899Complete white stage 192.986
SRR8316903Complete white stage 55.427
SRR8316902Silver flowering stage41.222
SRR8316904Silver flowering stage42.034
SRR8316905Silver flowering stage19.291
SRR8316906Gold flowering stage 63.596
SRR8316907Gold flowering stage 83.709
SRR8316908Gold flowering stage 101.486
SRP132670SRR6706286Control173.440
SRR6706287Light intensity 50%184.322
SRR6706288Light intensity 20%206.485
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1249.959
CNS0095593Slightly white alabastrum(diploid) 2266.065
CNS0095594Slightly white alabastrum(diploid) 3218.261
CNS0095595Whole white alabastrum(diploid) 2182.075
CNS0095596Whole white alabastrum(diploid) 3240.184
CNS0095597Whole white alabastrum(diploid) 4176.764
CNS0095598Silvery flower (diploied) 1108.465
CNS0095599Silvery flower (diploied) 2102.956
CNS0095600Silvery flower (diploied) 385.556
CNS0095601Golden flower (diploid) 176.814
CNS0095602Golden flower (diploid) 271.780
CNS0095603Golden flower (diploid) 372.390
CNS0095604Slightly white alabastrum(tetraploid) 1195.406
CNS0095605Slightly white alabastrum(tetraploid) 2193.902
CNS0095606Slightly white alabastrum(tetraploid) 3204.717
CNS0095607Whole white alabastrum(tetraploid) 1116.314
CNS0095608Whole white alabastrum(tetraploid) 2118.131
CNS0095609Whole white alabastrum(tetraploid) 3184.543
CNS0095610Silvery flower (tetraploid) 1106.434
CNS0095611Silvery flower (tetraploid) 295.571
CNS0095612Silvery flower (tetraploid) 370.802
CNS0095613Golden flower (tetraploid) 160.676
CNS0095614Golden flower (tetraploid) 293.776
CNS0095615Golden flower (tetraploid) 348.651
CRA001975CRR073297Stem 1150.963
CRR073298Stem 2147.429
CRR073299Stem 3170.188
CRR073300Leaf 1154.897
CRR073301Leaf 2196.045
CRR073302Leaf 3231.618
CRR073303Juvenile bud 1223.044
CRR073304Juvenile bud 2181.354
CRR073305Juvenile bud 3182.675
CRR073306Third green 148.843
CRR073307Third green 245.373
CRR073308Third green 351.682
CRR073309Second white 136.288
CRR073310Second white 228.695
CRR073311Second white 326.156
CRR073312Silver flowering 125.540
CRR073313Silver flowering 225.433
CRR073314Silver flowering 328.182
CRR073315Gold flowering 162.619
CRR073316Gold flowering 275.617
CRR073317Gold flowering 349.464
CRR073318Tawny withering 1204.364
CRR073319Tawny withering 2197.474
CRR073320Tawny withering 3225.536