Gene detail

Detail information of GWHGAAZE017719

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002262701.1	PREDICTED: elongator complex protein 3 [Vitis vinifera]
Swissprot	tr\|Q93ZR1\|ELP3_ARATH	Elongator complex protein 3
trEMBL	tr\|F6GSF4\|F6GSF4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB42893.1}
TAIR10	AT5G50320.1	radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10021139	10027271	+
GWHAAZE00000005	mRNA	10021139	10027271	+
GWHAAZE00000005	exon	10021139	10021608	+
GWHAAZE00000005	exon	10023017	10023106	+
GWHAAZE00000005	exon	10023896	10023965	+
GWHAAZE00000005	exon	10024079	10024251	+
GWHAAZE00000005	exon	10024924	10025098	+
GWHAAZE00000005	exon	10025605	10025771	+
GWHAAZE00000005	exon	10025946	10026138	+
GWHAAZE00000005	exon	10026260	10026364	+
GWHAAZE00000005	exon	10026585	10026737	+
GWHAAZE00000005	exon	10027113	10027271	+
GWHAAZE00000005	CDS	10021139	10021608	+
GWHAAZE00000005	CDS	10023017	10023106	+
GWHAAZE00000005	CDS	10023896	10023965	+
GWHAAZE00000005	CDS	10024079	10024251	+
GWHAAZE00000005	CDS	10024924	10025098	+
GWHAAZE00000005	CDS	10025605	10025771	+
GWHAAZE00000005	CDS	10025946	10026138	+
GWHAAZE00000005	CDS	10026260	10026364	+
GWHAAZE00000005	CDS	10026585	10026737	+
GWHAAZE00000005	CDS	10027113	10027271	+

Transcript Sequence
>GWHTAAZE017739 ATGGCGACGGCGGTGGTAGCAGAACCCCGAAAGCTCCCTCGGCCAGGGCGAGGCGGCGTCGTATCGCACGGACTAAGCGAGGAAGAAGCCCGAGTCAGAGCCATAGCCGAGATCGTCAACAACATGGTAGAACTTTCACACAAAGGCGAAAACGTCGACTTAAATGCCCTCAAGTCCGCCGCCTGCCGGAAATACGGACTCTCACGCGCCCCCAAACTCGTCGAGATGATTGCAGCCCTTCCCGATTCTGAGCGTGAATCTCTTCTCCCTAAACTCCGGGCCAAGCCTGTACGAACTGCCTCGGGTATTGCCGTTGTGGCTGTTATGTCGAAGCCTCACCGGTGCCCGCACATAGCGACTACCGGGAATATTTGTGTCTACTGTCCCGGTGGTCCTGATTCGGATTTCGAGTATAGTACTCAGTCGTATACGGGGTACGAGCCGACTAGCATGCGAGCCATTCGTGCTAGATTGATTATCAAGTTTTGGAATGGAACATTTGAATACGGTGATTTTGGATCAACTCTCCTCATAATCGCTACGTTGGAATCTCAATCTAGATATAACCCATATGTCCAAGCCAGGGGCAGGATAGACCAGCTGAAGCGTTTGGGTCACAGTGTAGACAAGGTTGAGTTCATTCTGATGGGAGGTACTTTCATGTCATTACCTTCAGAATACCGCGATTACTTTATAAGGAATCTTCATGATGCTTTATCTGGGCATACTTCGGCCAATGTTGAAGAGGCAGTTTCCTACTCAGAACACAGTGCAACAAAGTGTATTGGGATGACTATTGAAACGAGGCCAGACTACTGCCTGGGACCTCATTTGAGGCAGATGCTTTCATATGGGTGTACACGGCTGGAGATTGGAGTTCAGAGCACATACGAGGATGTTGCTCGTGACACTAATAGAGGCCACACAGTAGCAGCTGTTGCTGATTGCTTCTGCTTGGCCAAGGATGCCGGTTTTAAGGTTGTTGCTCATATGATGCCTGATCTTCCAAATGTTGGGGTTGAAAGAGACTTGGAAAGTTTTAAGGAGTTCTTTGAAAGCCCTTCATTTAGAGCTGATGGGCTTAAAATTTATCCAACACTTGTAATTCGTGGAACTGGTCTTTACGAGCTCTGGAAAACTGGCAGGTATAGGAATTACCCGCCCGAGCAGCTTGTCGACATAGTAGCTCGTATCCTAGCAATGGTACCTCCTTGGACACGCATTTATAGAGTTCAAAGGGATATACCGATGCCACTAGTTACTTCTGGTGTTGAAAAAGGGAATCTTAGGGAGCTAGCTTTAGCTCGGATGGATGATTTAGGCTTGAAGTGCCGAGATGATATTCACCACAAAATAAGGCCTGAAGAAGTTCAGCTTGTTCGCCGCGATTACACAGCAAATGAGGGCTGGGAAACTTTCCTTTCCTATGAAGATACGCATCAGGATATTCTTGTTGGGTTGCTGCGGCTGCGAAAATGTGGGCGGAACACCACTTGCCCAGAACTCGTTGGGAAGTGCTCTATTGTTCGCGAACTCCATGTATATGGGACAGCAGTTCCAGTTCATGGACGGGACGCTGATAAGCTACAACATCAGGGTTATGGGACACTGCTTATGGAAGAGGCAGAAAGGATAGCTCTTCGAGAGCATAGGTCAAAGAAGATGGCTGTGATATCTGGGGTAGGGACTCGCCATTATTACAGGAAGTTGGGATATGAGCTTGAAGGCCCTTACATGGTAAAGCACCTTGTGTGA

Network for GWHGAAZE017719

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04055.22	Radical_SAM	123	341	3.20E-16
PF16199.6	Radical_SAM_C	359	437	1.90E-31
PF00583.26	Acetyltransf_1	449	572	2.40E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GNAT

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008080	molecular_function	N-acetyltransferase activity
GO:0003824	molecular_function	catalytic activity
GO:0051536	molecular_function	iron-sulfur cluster binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.396
	SRR3591706	second leaf	19.172
	SRR3591707	mature leaf	23.098
	SRR3591708	Shoot apex	33.635
	SRR3591709	Stem	23.755
	SRR3591710	White floral bud	25.093
	SRR3591711	White flower	30.628
	SRR3591712	Green floral bud	28.465
	SRR3591713	Yellow flower	31.373
SRP173429	SRR8316895	Juvenile bud stage	18.588
	SRR8316896	Juvenile bud stage	25.205
	SRR8316897	Juvenile bud stage	14.611
	SRR8316894	Third green stage	9.940
	SRR8316900	Third green stage	30.813
	SRR8316901	Third green stage	30.856
	SRR8316898	Complete white stage	11.474
	SRR8316899	Complete white stage	31.217
	SRR8316903	Complete white stage	17.018
	SRR8316902	Silver flowering stage	10.834
	SRR8316904	Silver flowering stage	15.018
	SRR8316905	Silver flowering stage	7.945
	SRR8316906	Gold flowering stage	32.495
	SRR8316907	Gold flowering stage	29.617
	SRR8316908	Gold flowering stage	35.116
SRP132670	SRR6706286	Control	31.777
	SRR6706287	Light intensity 50%	30.336
	SRR6706288	Light intensity 20%	33.412
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.175
	CNS0095593	Slightly white alabastrum(diploid) 2	19.740
	CNS0095594	Slightly white alabastrum(diploid) 3	22.115
	CNS0095595	Whole white alabastrum(diploid) 2	20.229
	CNS0095596	Whole white alabastrum(diploid) 3	24.939
	CNS0095597	Whole white alabastrum(diploid) 4	21.392
	CNS0095598	Silvery flower (diploied) 1	24.487
	CNS0095599	Silvery flower (diploied) 2	22.715
	CNS0095600	Silvery flower (diploied) 3	26.110
	CNS0095601	Golden flower (diploid) 1	24.357
	CNS0095602	Golden flower (diploid) 2	28.139
	CNS0095603	Golden flower (diploid) 3	28.542
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.249
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.081
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.900
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.269
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.799
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.015
	CNS0095610	Silvery flower (tetraploid) 1	29.350
	CNS0095611	Silvery flower (tetraploid) 2	33.823
	CNS0095612	Silvery flower (tetraploid) 3	30.910
	CNS0095613	Golden flower (tetraploid) 1	20.567
	CNS0095614	Golden flower (tetraploid) 2	31.028
	CNS0095615	Golden flower (tetraploid) 3	32.510
CRA001975	CRR073297	Stem 1	29.259
	CRR073298	Stem 2	26.687
	CRR073299	Stem 3	27.577
	CRR073300	Leaf 1	32.976
	CRR073301	Leaf 2	34.078
	CRR073302	Leaf 3	30.088
	CRR073303	Juvenile bud 1	30.941
	CRR073304	Juvenile bud 2	21.461
	CRR073305	Juvenile bud 3	32.633
	CRR073306	Third green 1	15.654
	CRR073307	Third green 2	12.133
	CRR073308	Third green 3	15.640
	CRR073309	Second white 1	19.086
	CRR073310	Second white 2	18.570
	CRR073311	Second white 3	19.929
	CRR073312	Silver flowering 1	20.713
	CRR073313	Silver flowering 2	23.000
	CRR073314	Silver flowering 3	23.822
	CRR073315	Gold flowering 1	13.799
	CRR073316	Gold flowering 2	19.340
	CRR073317	Gold flowering 3	14.403
	CRR073318	Tawny withering 1	25.380
	CRR073319	Tawny withering 2	22.896
	CRR073320	Tawny withering 3	28.373