Detail information of GWHGAAZE017731


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDX92652.10BnaC07g39100D [Brassica napus]
Swissprottr|Q9C5M8|PLY18_ARATH0Probable pectate lyase 18 (Precursor)
trEMBLtr|A0A078ERW2|A0A078ERW2_BRANA0Pectate lyase {ECO:0000256|RuleBase:RU361123}
TAIR10AT4G24780.20Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1014415310145699+
GWHAAZE00000005mRNA1014415310145699+
GWHAAZE00000005exon1014415310144265+
GWHAAZE00000005exon1014435110145091+
GWHAAZE00000005exon1014524910145387+
GWHAAZE00000005exon1014547810145699+
GWHAAZE00000005CDS1014415310144265+
GWHAAZE00000005CDS1014435110145091+
GWHAAZE00000005CDS1014524910145387+
GWHAAZE00000005CDS1014547810145699+
Transcript Sequence

Network for GWHGAAZE017731

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00544.20Pectate_lyase_41393219.30E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01728pel Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040
Quorum sensingmap02024

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf116.714
SRR3591706second leaf216.341
SRR3591707mature leaf29.952
SRR3591708Shoot apex103.428
SRR3591709Stem102.899
SRR3591710White floral bud395.808
SRR3591711White flower45.944
SRR3591712Green floral bud120.633
SRR3591713Yellow flower14.923
SRP173429 SRR8316895Juvenile bud stage 42.253
SRR8316896Juvenile bud stage 38.623
SRR8316897Juvenile bud stage 15.318
SRR8316894Third green stage 9.360
SRR8316900Third green stage 102.177
SRR8316901Third green stage 73.629
SRR8316898Complete white stage 417.866
SRR8316899Complete white stage 185.127
SRR8316903Complete white stage 521.595
SRR8316902Silver flowering stage59.915
SRR8316904Silver flowering stage107.660
SRR8316905Silver flowering stage54.555
SRR8316906Gold flowering stage 93.687
SRR8316907Gold flowering stage 30.515
SRR8316908Gold flowering stage 57.927
SRP132670SRR6706286Control163.942
SRR6706287Light intensity 50%144.923
SRR6706288Light intensity 20%126.215
CNP0000432CNS0095592Slightly white alabastrum(diploid) 127.765
CNS0095593Slightly white alabastrum(diploid) 231.475
CNS0095594Slightly white alabastrum(diploid) 327.430
CNS0095595Whole white alabastrum(diploid) 232.818
CNS0095596Whole white alabastrum(diploid) 332.407
CNS0095597Whole white alabastrum(diploid) 418.342
CNS0095598Silvery flower (diploied) 19.102
CNS0095599Silvery flower (diploied) 218.103
CNS0095600Silvery flower (diploied) 337.080
CNS0095601Golden flower (diploid) 19.824
CNS0095602Golden flower (diploid) 210.189
CNS0095603Golden flower (diploid) 39.909
CNS0095604Slightly white alabastrum(tetraploid) 138.879
CNS0095605Slightly white alabastrum(tetraploid) 226.574
CNS0095606Slightly white alabastrum(tetraploid) 372.441
CNS0095607Whole white alabastrum(tetraploid) 117.560
CNS0095608Whole white alabastrum(tetraploid) 225.923
CNS0095609Whole white alabastrum(tetraploid) 398.380
CNS0095610Silvery flower (tetraploid) 131.423
CNS0095611Silvery flower (tetraploid) 234.264
CNS0095612Silvery flower (tetraploid) 385.496
CNS0095613Golden flower (tetraploid) 11.435
CNS0095614Golden flower (tetraploid) 277.116
CNS0095615Golden flower (tetraploid) 350.035
CRA001975CRR073297Stem 1130.732
CRR073298Stem 2134.243
CRR073299Stem 3176.055
CRR073300Leaf 1452.975
CRR073301Leaf 2263.563
CRR073302Leaf 3286.193
CRR073303Juvenile bud 1311.813
CRR073304Juvenile bud 2394.955
CRR073305Juvenile bud 3229.858
CRR073306Third green 1409.767
CRR073307Third green 2237.210
CRR073308Third green 3350.668
CRR073309Second white 159.721
CRR073310Second white 263.818
CRR073311Second white 321.532
CRR073312Silver flowering 14.635
CRR073313Silver flowering 210.995
CRR073314Silver flowering 312.245
CRR073315Gold flowering 17.182
CRR073316Gold flowering 211.259
CRR073317Gold flowering 327.558
CRR073318Tawny withering 1235.839
CRR073319Tawny withering 2110.607
CRR073320Tawny withering 381.165