Gene detail

Detail information of GWHGAAZE017734

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002275969.2	PREDICTED: putative multidrug resistance protein [Vitis vinifera]
Swissprot	tr\|Q6YUU5\|MDR_ORYSJ	Putative multidrug resistance protein
trEMBL	tr\|F6GTQ0\|F6GTQ0_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB42916.1}
TAIR10	AT3G28345.1	ABC transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10181383	10187232	+
GWHAAZE00000005	mRNA	10181383	10187232	+
GWHAAZE00000005	exon	10181383	10181643	+
GWHAAZE00000005	exon	10181869	10181923	+
GWHAAZE00000005	exon	10182619	10182809	+
GWHAAZE00000005	exon	10182905	10183362	+
GWHAAZE00000005	exon	10183862	10184402	+
GWHAAZE00000005	exon	10184857	10186733	+
GWHAAZE00000005	exon	10186866	10187232	+
GWHAAZE00000005	CDS	10181383	10181643	+
GWHAAZE00000005	CDS	10181869	10181923	+
GWHAAZE00000005	CDS	10182619	10182809	+
GWHAAZE00000005	CDS	10182905	10183362	+
GWHAAZE00000005	CDS	10183862	10184402	+
GWHAAZE00000005	CDS	10184857	10186733	+
GWHAAZE00000005	CDS	10186866	10187232	+

Transcript Sequence
>GWHTAAZE017754 ATGGAAGAAATTGACCAAGAAACAGAGAGAAATAATGGATCACCTGGCAAGCCTGAGGGAAATGAGAATCAAGAAACATGTCCGAGAGGGTCATTAAGGACCGTTCTGAAACAATCAGACGGGACGGATATGTTGCTGATGGTGCTGGGAACAATTGGATGTGTTGCAGATGGATCTTCCCTGGCCACAATCATGCTTGTCCTCAGCAACTTGATGAATGGCTATGCTTCTTCTTCACTCACCTCTGCAGATATAAACAAGTATGCACTGGCCTTGGTCTACGTTGCTATTGGGGTGGGATCCGGTGCATTTCTAGAAGGATTATGCTGGGCACGAACAGCAGAAAGGCAAACCTCTCGACTGCGCACTAGATACTTACACACTGTTATGCGCCAAGACATTGCATTCTTTGATACAACTCATGGTCATGGAGCATCCATTACATCCCAAGTAGTCACGAGTATTTCAACAGACACACTCACCATACAAGGAGTTCTTAGTGAGAAGATTCCAAACTTCATTACGAATATAGCAATATTCTTCACAGGTCAATTAGCTGCTCTGTACCTATGTTGGAGACTAGCCATAATTGCCATCCCCGCATTGTCGATGTTGATTATTCCAGGGTTAGTATATGGAATGCTTTTAGCCAGGGTTGGGGAAAAGATACAAGAAGCTTATGCTGTAGCTGGTGGGATAGTGGAGCAAGCATTTTCTTCGATCAGGACAGTATATTCTTATGTGGGAGAGGAAAGAACGGTTAAGAGCTTTTCAGATGCATTAGGACCCACACTTAATCTTGGAATTAAACAAGGACTGATGAAGGGAATGGCGATTGGGAGCATTGGAGTTGTATTTGCGGTTTGGGCACTTCAGAGTTACTATGGGAGCATCTTGGTTACTAAGAAAGGAGTCAAAGGCGGAGATGCTTTCACCGCTGGAACATGCATTGTCTATGGAGGACTAGCTCTTGGGGCCGCTTTAATAAATGTCAAGTACTTTGCTGAAGCGAATATTGCAGCTGCTCTTATTTTTGAAATGATTGAACGAGTTCCAAGCATAGACTCTGCAAATCAACAGGGCGAAACCATACCAGGTGTTAAAGGTGAATTAGAGTTCAAAGACATCGACTTTGCATATCCATCAAGACCAGAAAATTTGATTTTGAGAAAATTCAATCTTAAGATGATGGCCTGTCAAACAGTTGGATTGGTGGGTGTGAGTGGCTCGGGCAAATCGACAGTGATCAATTTGCTTGAAAGATTCTACAATCCCCTTGAGGGAGAAATTCTACTGGATGGAATTAGTATACTGGACCTCCAACTTAAGTGGCTGAGGAGTCAAATGGGTTTGGTTAGCCAAGAGCCTATACTTTTTGCGACCTCAATCAAAGAAAATATCCTATTTGGGAAAGCAGAAGCTTCGCAAGAGGAGATTGTTCAAGCCGCTAAAGGTTCAAATGCACACGACTTCATTATACAACTACCAAATGGATATGACACCCATGTAGGACAATTGGGAATTCGGATGTCAGAAGGGCAGAAACAAAGGATTTCCATTGCAAGGGCACTGATTAGAGAGCCAAGAATCTTGCTGCTTGACGAAGCAACAAGCTCTTTGGATTCACAATCTGAAAATGTTGTGCAAAATGCTTTGAACCAGGCCTCGTTAGGACGTACCACAATAATCATAGCACATCGTCTCTCCGCACTCCGTGATGCTGATCTAATTGCGGTTATTCAGTCAGGTCAAGTAGTAGAGTCTGGTTCTCATGACCAACTTGTAAAGAACAAGCATGGGCCATACTCAGCCATGGTACAGCTACAAAATATGCTAATGAAAGATGAAACCGCATCATCATTTGAAGGAACTGAAACTAACATATCTTTGTCCCAAAAAAGAAATGCTCATTTAGCAGAAACAACAAAGGAACTGGTTACTTCTCTAACCAATCTCGAGCAAATGACCAAAGAAAGGGCAGAAGGGCGACACTTCAACCCGTCCTTGTGGCACCTGGTACAAATGACTGCATCTGACTGGAAGTCAACTCTATTAGGTTGCATTGGTGCTCTTTGTTATGGAATAATTCAGCCATTGCATTCTTTCTGCCTGGGTGCAGTTCTATCTGTGTACTTTATCAAAGATCATGATGAAATCAGGTCAGAAATAAGAAAATATTGCTTTGCCTTCTTAACCTTTGCTGTCTTTGCTTTCATCTCCAATGTGGTGCAACATTACTACTTCGGAGTAATGGGAGAACGTTTGACAAAAAAGATAAGAGAGGTAATCTTTGAGAAGATCCTCAGTTTTGAGATCGAATGGTTTGATCAAGAACACAACAATACTGGGGCTCTATGCTCGAGACTATCAACAGATGCGATGATGGTAAGAACCCTTGTGGCAGATCGTTTGGCATTCTTGACCCAGTCTATATCAGCAGCAACTTTAGCGGTTATTATGGGTATGATGTTGTCTTGGAGACTTTCCCTTGCAGCTATTGCTATGCAACCGCTTATCATTGGTGCCTTCTATGTGAGAGCAATAATGATGAGGACCATGTCCAAGAAAATCTTGAAAGCGCAGAACAGTAGCAGTGAATTAGCAAGTGAGGCTGTTGGGAACCACAGAATCATCACTGCCTTCCATTCTCAGGAGAAGGTTATGGCACTTTTCGAGGATACACAAAAAGTCCCCAAGAACGAGAGCCACAAGCAATCTTGGTATGCAGGGATAGGATTATTTACCTCGCAATTCCTCACTGCTGCTAATTCAGGACTACTTTTCTGGTATGGGGGTAAGCTTCTCTACTGGGAAGAAATCACATACAAGCACCTCTTTCAGACATTCTTCATCCTGGTAGCTACAGGGAGAGTTATAGCAGAGACAGGGAGCATGACAGCAGATTTATCTAAAGGGACAAATGCGTTAAAATCAATCTTTGTGATTTTGAAAAGAAAGAGTAAGATGGAGCCGAACAAACAGGATGTTCTCAACCCAGCAAAGATAGATGGGCATATAGAGCTTAAGGAAGTGGATTTCTTTTATCCAACAAGACCAAAACAGATGATCTTGGTGGGTCTAAGCCTAAAAGTTGATGCTGGAGAAGTTGTTGCCTTAGTGGGTCAAAGTGGATCTGGAAAATCAACAATTGTCAGAATGATTGAGAGATTTTATGATCCCTTAAAAGGATCCGTGGAAGTGGATGGAGTGGACATCAAATGCTACAATCTGAGAGCATTGAGGTCACATATTGCATTGGTTGGTCAGGGGCCTACCCTATTTGCAGGAACTATCCATGAAAACATTGCATTTGGGAAAGAAAATACAACCGAAGCTGAGATCATAGAAGCTGCAACTCTTGCAAATGCCCACGAATTTATATGTTCAATGAAAGATGGCTACGCAACATACTGTGGAGAGAGAGGCATGCAGTTATCAGGGGGACAAAAGCAGAGGTTAGCGCTTGCCCGAGCAATCCTGAAAAATCCTGCCATCTTACTTTTGGACGAGGCAACAAGTGCATTAGATACTAAATCTGAGAAACTTGTACAAGATGCACTAGAGAAGATCATGATTGGTAGGACATGTTTGGTCGTAGCTCATCGGCTTTCTACAGTACAAAAGGCAAAGAAAATATCAGTGGTGGACAGCGGGAGGATAATAGAAGAGGGTTCCCATGATGAGCTACTTGTAAGAGGAGAAAAAGTGCATACTATTCACTTGTTAGACTCCAACAAGCAGCCACCGTGA

Network for GWHGAAZE017734

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0095

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	48	312	3.10E-40
PF00005.28	ABC_tran	389	538	4.30E-30
PF00664.24	ABC_membrane	684	952	2.40E-48
PF00005.28	ABC_tran	1026	1173	3.00E-32

Protein Sequence

>GWHPAAZE017744
MEEIDQETERNNGSPGKPEGNENQETCPRGSLRTVLKQSDGTDMLLMVLGTIGCVADGSSLATIMLVLSNLMNGYASSSLTSADINKYALALVYVAIGVGSGAFLEGLCWARTAERQTSRLRTRYLHTVMRQDIAFFDTTHGHGASITSQVVTSISTDTLTIQGVLSEKIPNFITNIAIFFTGQLAALYLCWRLAIIAIPALSMLIIPGLVYGMLLARVGEKIQEAYAVAGGIVEQAFSSIRTVYSYVGEERTVKSFSDALGPTLNLGIKQGLMKGMAIGSIGVVFAVWALQSYYGSILVTKKGVKGGDAFTAGTCIVYGGLALGAALINVKYFAEANIAAALIFEMIERVPSIDSANQQGETIPGVKGELEFKDIDFAYPSRPENLILRKFNLKMMACQTVGLVGVSGSGKSTVINLLERFYNPLEGEILLDGISILDLQLKWLRSQMGLVSQEPILFATSIKENILFGKAEASQEEIVQAAKGSNAHDFIIQLPNGYDTHVGQLGIRMSEGQKQRISIARALIREPRILLLDEATSSLDSQSENVVQNALNQASLGRTTIIIAHRLSALRDADLIAVIQSGQVVESGSHDQLVKNKHGPYSAMVQLQNMLMKDETASSFEGTETNISLSQKRNAHLAETTKELVTSLTNLEQMTKERAEGRHFNPSLWHLVQMTASDWKSTLLGCIGALCYGIIQPLHSFCLGAVLSVYFIKDHDEIRSEIRKYCFAFLTFAVFAFISNVVQHYYFGVMGERLTKKIREVIFEKILSFEIEWFDQEHNNTGALCSRLSTDAMMVRTLVADRLAFLTQSISAATLAVIMGMMLSWRLSLAAIAMQPLIIGAFYVRAIMMRTMSKKILKAQNSSSELASEAVGNHRIITAFHSQEKVMALFEDTQKVPKNESHKQSWYAGIGLFTSQFLTAANSGLLFWYGGKLLYWEEITYKHLFQTFFILVATGRVIAETGSMTADLSKGTNALKSIFVILKRKSKMEPNKQDVLNPAKIDGHIELKEVDFFYPTRPKQMILVGLSLKVDAGEVVALVGQSGSGKSTIVRMIERFYDPLKGSVEVDGVDIKCYNLRALRSHIALVGQGPTLFAGTIHENIAFGKENTTEAEIIEAATLANAHEFICSMKDGYATYCGERGMQLSGGQKQRLALARAILKNPAILLLDEATSALDTKSEKLVQDALEKIMIGRTCLVVAHRLSTVQKAKKISVVDSGRIIEEGSHDELLVRGEKVHTIHLLDSNKQPP

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.225
	SRR3591706	second leaf	0.054
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.029
	SRR3591709	Stem	0.027
	SRR3591710	White floral bud	0.701
	SRR3591711	White flower	0.310
	SRR3591712	Green floral bud	0.032
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.237
	SRR8316896	Juvenile bud stage	0.063
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.076
	SRR8316900	Third green stage	0.171
	SRR8316901	Third green stage	0.137
	SRR8316898	Complete white stage	0.014
	SRR8316899	Complete white stage	0.481
	SRR8316903	Complete white stage	0.333
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.015
	SRR8316905	Silver flowering stage	0.017
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.027
SRP132670	SRR6706286	Control	0.114
	SRR6706287	Light intensity 50%	0.143
	SRR6706288	Light intensity 20%	0.142
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.392
	CNS0095593	Slightly white alabastrum(diploid) 2	0.194
	CNS0095594	Slightly white alabastrum(diploid) 3	0.317
	CNS0095595	Whole white alabastrum(diploid) 2	0.286
	CNS0095596	Whole white alabastrum(diploid) 3	0.053
	CNS0095597	Whole white alabastrum(diploid) 4	0.292
	CNS0095598	Silvery flower (diploied) 1	0.357
	CNS0095599	Silvery flower (diploied) 2	0.355
	CNS0095600	Silvery flower (diploied) 3	0.329
	CNS0095601	Golden flower (diploid) 1	0.271
	CNS0095602	Golden flower (diploid) 2	0.764
	CNS0095603	Golden flower (diploid) 3	1.217
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.760
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.128
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.005
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.513
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.044
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.183
	CNS0095610	Silvery flower (tetraploid) 1	0.018
	CNS0095611	Silvery flower (tetraploid) 2	0.291
	CNS0095612	Silvery flower (tetraploid) 3	0.113
	CNS0095613	Golden flower (tetraploid) 1	0.001
	CNS0095614	Golden flower (tetraploid) 2	0.027
	CNS0095615	Golden flower (tetraploid) 3	0.016
CRA001975	CRR073297	Stem 1	0.103
	CRR073298	Stem 2	0.121
	CRR073299	Stem 3	0.052
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.040
	CRR073302	Leaf 3	0.064
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.016
	CRR073306	Third green 1	0.001
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.001
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.113
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.046
	CRR073318	Tawny withering 1	0.002
	CRR073319	Tawny withering 2	0.013
	CRR073320	Tawny withering 3	0.088