Gene detail

Detail information of GWHGAAZE017742

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP31350.1	0	hypothetical protein JCGZ_11726 [Jatropha curcas]
Swissprot	tr\|Q9SIK7\|PSNB_ARATH	3E-166	Presenilin-like protein At2g29900
trEMBL	tr\|A0A067KGG7\|A0A067KGG7_JATCU	0	Presenilin {ECO:0000256\|RuleBase:RU361148}
TAIR10	AT2G29900.1	1E-99	Presenilin-2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10242194	10243477	-
GWHAAZE00000005	mRNA	10242194	10243477	-
GWHAAZE00000005	exon	10242194	10243477	-
GWHAAZE00000005	CDS	10242194	10243477	-

Transcript Sequence
>GWHTAAZE017762 ATGGACCAAAACCCTAGACGGACCGGCATTCTTGATTCAGTGGGCGAGGAAATCGTCAGAATTATAACCCCAGTATCAATTTGTATGTTCTTGGTGGTCATTCTAGTTTCCATATTGAACACCGATTCATCATCCTCATCAGATTCTTCAATTACCACCATAGCCACCATAGCTTACACCGAGGACAGCTCATCAATATGGGACAAGCTCAAAGGTGCTATTTTGAACTCCCTCGTCTTTGTTGCTGTTGTCACTGTTGTTACCTTCCTTTTGGTCCTCCTTTTTTACCTTAGATGCACCAAGTTCTTGAAATACTACATGGGTTTCTCTTCATTTATGGTCTTGGGTTTTATGGGTGGTGAAATTGCCCTGTTCTTGATCCAAGATTTCAGTTTTCCTATTGACTGCGTTACATTTGCCTTGGCTCTGTTTAACTTCACTGTCGTGGGAGTTCTTGCTGTGTTCATGTCTAAAATGGCAATTTTTGTAACACAAGGATATTTGGTTGTTATTGGGATGTTGGTTGCTTACTGGTTTACTCTTTTGCCTGAATGGACCACTTGGGTGCTTTTGGTTTTCATGTCATTATATGATCTTGCTGCAGTTTTGTTGCCTGGCGGGCCATTGAGGCTCTTGGTAGAGCTTGCTATATCCAGGGATGAGGATATCCCTGCTCTGGTTTACGAGGCCCGGCCAGTTAGTAGTCAGGATTTGGATCCAAGGGATGGTGTAGTTCAAAGGAGGGTGTGGAGAGATAGTAATATCAACCCTCTTGTGAATGAAAATTCAAATACTGGTTCTAATCCTATTATTGATTCGGTTCCTACTCTCGGTACATATTTATCTAGCCGAAGTGGTGCAAATGAAAGAAGTCTTGTCAATGCTGAAGAGGGTCAGGTTTCACAAGGGGAGTCTGAGCTATCTGCACCATTAATTGAACGCAGAATGAATGTGCAAATGCATTTAGTGGAAAATAGTGAAAATTTGGCAATTGAGGGAATTGGGTTGGGGTCATCAGGTGCAATTAAGCTGGGGCTGGGGGACTTCATTTTCTACAGTGTCTTGGTTGGCAGGGCTGCGATGTATGATTTCATGACCGTTTACGCGTGTTATCTTGCTATCATAGCTGGTCTTGGTATTACTCTGATCCTCCTTGCATTTTATCAGAAAGCTTTGCCCGCTCTTCCAGTGTCTGTTATGCTAGGTGTGTTGTTTTATCTCTTGACTCGGCTATTGCTTGAAGCTCTTGTTGTACAATGTTCTACAAACCTCTTGATGTTCTAG

Network for GWHGAAZE017742

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01080.18	Presenilin	15	416	3.00E-122

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04505	PSEN1, PS1	Wnt signaling pathway	map04310
		Notch signaling pathway	map04330
		Neurotrophin signaling pathway	map04722
		Axon regeneration	map04361

Gene Ontology

GO term	Ontology	Name
GO:0016485	biological_process	protein processing
GO:0016021	cellular_component	integral component of membrane
GO:0004190	molecular_function	aspartic-type endopeptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.603
	SRR3591706	second leaf	16.660
	SRR3591707	mature leaf	13.826
	SRR3591708	Shoot apex	17.170
	SRR3591709	Stem	17.958
	SRR3591710	White floral bud	12.361
	SRR3591711	White flower	13.845
	SRR3591712	Green floral bud	15.021
	SRR3591713	Yellow flower	9.077
SRP173429	SRR8316895	Juvenile bud stage	8.595
	SRR8316896	Juvenile bud stage	10.209
	SRR8316897	Juvenile bud stage	4.294
	SRR8316894	Third green stage	4.023
	SRR8316900	Third green stage	11.682
	SRR8316901	Third green stage	9.500
	SRR8316898	Complete white stage	5.113
	SRR8316899	Complete white stage	13.094
	SRR8316903	Complete white stage	9.120
	SRR8316902	Silver flowering stage	4.547
	SRR8316904	Silver flowering stage	9.133
	SRR8316905	Silver flowering stage	3.028
	SRR8316906	Gold flowering stage	11.099
	SRR8316907	Gold flowering stage	11.177
	SRR8316908	Gold flowering stage	10.344
SRP132670	SRR6706286	Control	4.562
	SRR6706287	Light intensity 50%	5.708
	SRR6706288	Light intensity 20%	5.680
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.319
	CNS0095593	Slightly white alabastrum(diploid) 2	10.705
	CNS0095594	Slightly white alabastrum(diploid) 3	9.098
	CNS0095595	Whole white alabastrum(diploid) 2	8.922
	CNS0095596	Whole white alabastrum(diploid) 3	7.994
	CNS0095597	Whole white alabastrum(diploid) 4	9.502
	CNS0095598	Silvery flower (diploied) 1	13.379
	CNS0095599	Silvery flower (diploied) 2	13.190
	CNS0095600	Silvery flower (diploied) 3	17.354
	CNS0095601	Golden flower (diploid) 1	13.826
	CNS0095602	Golden flower (diploid) 2	17.310
	CNS0095603	Golden flower (diploid) 3	18.725
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.133
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.601
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.404
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.637
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.504
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.159
	CNS0095610	Silvery flower (tetraploid) 1	15.885
	CNS0095611	Silvery flower (tetraploid) 2	12.728
	CNS0095612	Silvery flower (tetraploid) 3	8.368
	CNS0095613	Golden flower (tetraploid) 1	9.813
	CNS0095614	Golden flower (tetraploid) 2	13.227
	CNS0095615	Golden flower (tetraploid) 3	11.984
CRA001975	CRR073297	Stem 1	5.670
	CRR073298	Stem 2	5.805
	CRR073299	Stem 3	5.869
	CRR073300	Leaf 1	6.347
	CRR073301	Leaf 2	5.882
	CRR073302	Leaf 3	4.969
	CRR073303	Juvenile bud 1	5.086
	CRR073304	Juvenile bud 2	6.409
	CRR073305	Juvenile bud 3	8.190
	CRR073306	Third green 1	3.176
	CRR073307	Third green 2	4.052
	CRR073308	Third green 3	3.654
	CRR073309	Second white 1	5.606
	CRR073310	Second white 2	3.914
	CRR073311	Second white 3	4.082
	CRR073312	Silver flowering 1	2.679
	CRR073313	Silver flowering 2	6.230
	CRR073314	Silver flowering 3	4.009
	CRR073315	Gold flowering 1	6.623
	CRR073316	Gold flowering 2	5.738
	CRR073317	Gold flowering 3	12.178
	CRR073318	Tawny withering 1	6.933
	CRR073319	Tawny withering 2	6.542
	CRR073320	Tawny withering 3	5.934