Gene detail

Detail information of GWHGAAZE017745

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011087347.1	8.2357E-151	PREDICTED: ATP synthase subunit gamma, mitochondrial-like isoform X1 [Sesamum indicum]
Swissprot	tr\|P26360\|ATPG3_IPOBA	4E-149	ATP synthase subunit gamma, mitochondrial (Precursor)
trEMBL	tr\|A0A0A0LQ90\|A0A0A0LQ90_CUCSA	6E-150	Uncharacterized protein {ECO:0000313\|EMBL:KGN64050.1}
TAIR10	AT2G33040.1	2E-111	gamma subunit of Mt ATP synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10270693	10277112	-
GWHAAZE00000005	mRNA	10270693	10277112	-
GWHAAZE00000005	exon	10270693	10271007	-
GWHAAZE00000005	exon	10271345	10271378	-
GWHAAZE00000005	exon	10271689	10271812	-
GWHAAZE00000005	exon	10271905	10272027	-
GWHAAZE00000005	exon	10272647	10272774	-
GWHAAZE00000005	exon	10272860	10272973	-
GWHAAZE00000005	exon	10273921	10274073	-
GWHAAZE00000005	exon	10274203	10274258	-
GWHAAZE00000005	exon	10277018	10277112	-
GWHAAZE00000005	CDS	10277018	10277112	-
GWHAAZE00000005	CDS	10274203	10274258	-
GWHAAZE00000005	CDS	10273921	10274073	-
GWHAAZE00000005	CDS	10272860	10272973	-
GWHAAZE00000005	CDS	10272647	10272774	-
GWHAAZE00000005	CDS	10271905	10272027	-
GWHAAZE00000005	CDS	10271689	10271812	-
GWHAAZE00000005	CDS	10271345	10271378	-
GWHAAZE00000005	CDS	10270938	10271007	-
GWHAAZE00000005	three_prime_UTR	10270693	10270937	-

Transcript Sequence
>GWHTAAZE017765 ATGACCGCCATGGAAATTGTGGAGAAGATCTTTGAGAGCTTTCTCTCTCCCTCTGTCAGGGTTTTAGGCCGGCCAGGGTTTTACTCCTATCACAACTTGGATGGCAGGGAGCAGGCTTCTTTGGGAGTTCGGCGCATTTCAACTCAAGTTGTTAGAAACCGGATGAAAAGTGTTAAGAACATTCAGAAAATTACCAAGGCAATGAAAATGGTTGCAGCCTCTAAGCTGCGAGCAATTCAATCAAGAACTGAAAATTCTCGCGGCCTGTGGCAGCCATTCACTGCTCTTCTCGGTGACACTCCAAGTGTTGATGTGAAGAAGAATGTCATTGTTACAATTTCTTCAGACAAAGGTCTTTGCGGTGGAATTAATACTACATCAGTCAAGATAAGCAGGGCCCTTCAGAAGTTGAACTCTGGTCCCGATAAAGAGAGTAAATACGTCATATTGGGAGAAAAGGCAAAGGCTCAGCTGATAAGGGACTCAAAGACTGACATTGAGATATCCATGACTGAATTGCAGAAGCATTTTCTGAATTATACTCAGGTTTCTGTGATTGCAGATGACATCTTGAAAAACGCAGAATATGATGCATTGAGGATTGTCTTCAATAAGTTCCAATCCGTTGTCTCATTTTTGCAAACAACTGCCACTGTATTATCTCCCGAGGTTGTGGAGAGAGAATCGGAAGCAGGGGGAAAGCTTGGTGATCTGGATTCCTATGAAATTGAAGGTGGTGAAACAAAGTCAGAAGTTCTTCAGAATCTAACAGAATTCCAGTTTTCTTGTGTAGGTGATGTTCAATGCGGTTTTGGAGAATGCTTGCAAACCCGACAAGCATCAATTACCACAGAACTGATTGAGATTATATCTGGAGCGTCAGCACTAGAGGGCTAATTGCACGGCAACACTCGGCCACTCTTTGTTTTATGTTGATGAAATAAAACCATTCTAATGGTTCTGACATATTGACAATACCTTTTTGAGAGTATTTTGTTGAGTGATTCTAATAATTTCCCTTTTTAAACCTTCCATCCATCTCCAAGGAAATTCATCTTTATTCTTCATTTACAAAAAGTGAGCTTGAATGGTGAAGTATTGTGTTTATAGCTCATAAATTTTAATGAACGGCAACAAAACAT

Network for GWHGAAZE017745

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00231.20	ATP-synt	49	261	2.60E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02136	ATPeF1G, ATP5C1, ATP3	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0015986	biological_process	ATP synthesis coupled proton transport
GO:0045261	cellular_component	proton-transporting ATP synthase complex, catalytic core F(1)
GO:0046933	molecular_function	proton-transporting ATP synthase activity, rotational mechanism

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.242
	SRR3591706	second leaf	1.529
	SRR3591707	mature leaf	1.425
	SRR3591708	Shoot apex	2.104
	SRR3591709	Stem	2.490
	SRR3591710	White floral bud	8.696
	SRR3591711	White flower	2.566
	SRR3591712	Green floral bud	38.858
	SRR3591713	Yellow flower	1.788
SRP173429	SRR8316895	Juvenile bud stage	4.324
	SRR8316896	Juvenile bud stage	12.014
	SRR8316897	Juvenile bud stage	9.066
	SRR8316894	Third green stage	5.185
	SRR8316900	Third green stage	21.463
	SRR8316901	Third green stage	24.026
	SRR8316898	Complete white stage	0.189
	SRR8316899	Complete white stage	0.877
	SRR8316903	Complete white stage	0.466
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.483
	SRR8316905	Silver flowering stage	0.166
	SRR8316906	Gold flowering stage	0.279
	SRR8316907	Gold flowering stage	0.349
	SRR8316908	Gold flowering stage	0.522
SRP132670	SRR6706286	Control	6.500
	SRR6706287	Light intensity 50%	6.431
	SRR6706288	Light intensity 20%	6.233
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.168
	CNS0095593	Slightly white alabastrum(diploid) 2	9.581
	CNS0095594	Slightly white alabastrum(diploid) 3	20.759
	CNS0095595	Whole white alabastrum(diploid) 2	23.519
	CNS0095596	Whole white alabastrum(diploid) 3	29.174
	CNS0095597	Whole white alabastrum(diploid) 4	23.375
	CNS0095598	Silvery flower (diploied) 1	0.525
	CNS0095599	Silvery flower (diploied) 2	0.167
	CNS0095600	Silvery flower (diploied) 3	0.151
	CNS0095601	Golden flower (diploid) 1	0.723
	CNS0095602	Golden flower (diploid) 2	0.328
	CNS0095603	Golden flower (diploid) 3	0.140
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.352
	CNS0095605	Slightly white alabastrum(tetraploid) 2	32.316
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.111
	CNS0095607	Whole white alabastrum(tetraploid) 1	49.469
	CNS0095608	Whole white alabastrum(tetraploid) 2	61.477
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.734
	CNS0095610	Silvery flower (tetraploid) 1	0.394
	CNS0095611	Silvery flower (tetraploid) 2	0.522
	CNS0095612	Silvery flower (tetraploid) 3	0.867
	CNS0095613	Golden flower (tetraploid) 1	0.252
	CNS0095614	Golden flower (tetraploid) 2	0.287
	CNS0095615	Golden flower (tetraploid) 3	0.632
CRA001975	CRR073297	Stem 1	2.466
	CRR073298	Stem 2	4.542
	CRR073299	Stem 3	1.198
	CRR073300	Leaf 1	8.751
	CRR073301	Leaf 2	7.396
	CRR073302	Leaf 3	6.567
	CRR073303	Juvenile bud 1	7.483
	CRR073304	Juvenile bud 2	7.823
	CRR073305	Juvenile bud 3	0.401
	CRR073306	Third green 1	0.478
	CRR073307	Third green 2	1.239
	CRR073308	Third green 3	0.715
	CRR073309	Second white 1	0.109
	CRR073310	Second white 2	0.550
	CRR073311	Second white 3	0.147
	CRR073312	Silver flowering 1	0.758
	CRR073313	Silver flowering 2	0.677
	CRR073314	Silver flowering 3	0.047
	CRR073315	Gold flowering 1	0.852
	CRR073316	Gold flowering 2	0.207
	CRR073317	Gold flowering 3	1.114
	CRR073318	Tawny withering 1	0.799
	CRR073319	Tawny withering 2	0.595
	CRR073320	Tawny withering 3	0.910