Gene detail

Detail information of GWHGAAZE017747

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009595027.1	0	PREDICTED: dnaJ homolog subfamily C member 21 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9ZSY2\|DNJ15_ARATH	4E-11	Chaperone protein dnaJ 15
trEMBL	tr\|K4BL16\|K4BL16_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g115140.2.1}
TAIR10	AT1G74250.1	5E-123	DNAJ heat shock N-terminal domain-containing protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10286274	10288440	+
GWHAAZE00000005	mRNA	10286274	10288440	+
GWHAAZE00000005	exon	10286274	10288016	+
GWHAAZE00000005	exon	10288240	10288292	+
GWHAAZE00000005	exon	10288383	10288440	+
GWHAAZE00000005	CDS	10286274	10288016	+
GWHAAZE00000005	CDS	10288240	10288292	+
GWHAAZE00000005	CDS	10288383	10288440	+

Transcript Sequence
>GWHTAAZE017767 ATGGCTTCGTCGGAGAAGCGATGTCTCTACGAGGTCCTCGGTCTCAACCGAGATTGCAACGCCGACGAGATCCGGTCGGCTTACAGGAAACTAGCTCTCCAACGCCACCCCGACAAGCTCGTCCAGTCCGGCGTATCAGAATCCGAAGCCACCGCCTCCTTCCAAGAACTCGTTAACGCCTACGAAGTCCTCTCCGATCCTCGCGAACGAGCCTGGTACGATTCTCACCGTTCTCAAATTCTCTTCGCCAGTTCCAATTCTTCCAAATCAAAATCCAATTCAACCACTCTGGTCCCTGATCTCTTCAGTTTTTTCTCCAATTCTGTTTTCTCTGGTTATTCCGATACCGGCAAGGGGTTTTATAAGGTTTTTGGTGATGTATTTGATAAAATTTATCAGAATGAATTGAATTTTGCGGATAAGCTAGGCTTAGGGGTGGGGTCAGTTAAGGAAGCGCCATTGATGGGGAATTTGAAGTGTCAGTATTCGCAGGTGAATGCTTTTTATGGATACTGGTTAGGGTTCGTGACCGTGATGGATTTTGTTTGGGTCGATCAGTATGATGCGATGGCGGGGCCAAATAGGAAGTCGAGGAGGGTGATGGAGGATGAGAACAAGAAGATGAGGAAGAAGGCGAGGAGGGAGTATAACGAGACGGTGAGGGGGTTGGCGGAGTTTGTGAAGAAGAGGGACAAGAGAGTGATTGATATGCAGGTGAAGAGGAATGAGGAGATGGATAGGAAGAGGGAGGAAGATAAGGAGAAGAAAAGGAAGGTGGAGAGAGAGAGGTTGGAGAGGGCTAGGGCTTATGTGGAGCCGGATTGGGCTAAAGTTGAGGAGGTGGATGATGGGGTGATTGAGGAAGAGGAGGTGGTGGAAGAGAGTGAGAAGAAGAAGGAGCTGTATTGTGTGGTATGCGGGAAGAAGTTTAAGAGTGATAAGCAGTGGAAGAATCATGAGCAGTCAAAAAAGCATCAGGAGAAGGTAGCAGAGTTCAGGAAAGCATTGAGTGATGAAGAGAGAGAAAATGGGGAAGAGGAAGAGGAGGTTTTGGGCGGTGACGAGGGAAATGGGTTTGTGTCTGCTGATGATGGGGTGGATGAATTACAAGAGCAATTTGAGAATGGTCTTGAAATTCAAGAACCAGAACAAAATGATGGTCAGGGAGATGAATCTAGCGAGGAGGAAGTGTTAGTTGATGTCAGGAATCTTGATGGGGCAGAAGGGGTATCAGATGATGATGAAGCAACTTTTCTTAAAGCAATGTTGTCTGGGCACAAGAATAGAAAAAAGGCTGGAAAATTGCGCAAATCTAAGGTTTCATTCACGGAAGTTTACATTGAGGTTGATAATGACGAGATGTATAATAATCGGAAGGGTAGTAGAAGGAATAAAGGAGGTAGGAGAGAGAGGGGTAAAAGAGGTAGTGAAGAAACAGAGAGCACAGATGGGGCTGACATCAATAAGTTGGCCGAGGTAAATAAGGGACATGATGAGAGTTCCCATGTGGAGGAGGAGCCAACCCATAATTCTGCAGAAACTGAGACAAATAGTAAAGAAGGTGATCGGCCAGAAACTAATAGTAAAGAAGTTAATCGGTCAGAAACTAAGAGCAAGAGTAAACAGGGTGATCAACCAGAAACGAGTCATAAGACTTCAAAGCAAGCTCTTGATAAGAAAGGCGCCTCCAAGAAGGAGACCAATGCCAAATCTAAGATTGCATCCAAGGGAAAGAAACAAAAGGCAACATCAGATGGCCACGTATGTGAGAAGTGTGGAGAGGACTTTGAGTCTAGGAATAAACTACATAAGCATTTGAGCGATACGGGTCATGCTTCGCTTAAATCACGATGA

Network for GWHGAAZE017747

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00226.32	DnaJ	9	74	2.00E-20
PF12171.9	zf-C2H2_jaz	301	326	2.30E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	17.818
	SRR3591706	second leaf	12.982
	SRR3591707	mature leaf	11.938
	SRR3591708	Shoot apex	14.875
	SRR3591709	Stem	18.652
	SRR3591710	White floral bud	22.616
	SRR3591711	White flower	26.067
	SRR3591712	Green floral bud	20.845
	SRR3591713	Yellow flower	19.486
SRP173429	SRR8316895	Juvenile bud stage	14.988
	SRR8316896	Juvenile bud stage	24.200
	SRR8316897	Juvenile bud stage	11.374
	SRR8316894	Third green stage	10.411
	SRR8316900	Third green stage	21.553
	SRR8316901	Third green stage	25.415
	SRR8316898	Complete white stage	6.410
	SRR8316899	Complete white stage	20.297
	SRR8316903	Complete white stage	18.479
	SRR8316902	Silver flowering stage	9.298
	SRR8316904	Silver flowering stage	13.452
	SRR8316905	Silver flowering stage	7.828
	SRR8316906	Gold flowering stage	19.642
	SRR8316907	Gold flowering stage	23.241
	SRR8316908	Gold flowering stage	25.174
SRP132670	SRR6706286	Control	22.379
	SRR6706287	Light intensity 50%	21.787
	SRR6706288	Light intensity 20%	21.655
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.590
	CNS0095593	Slightly white alabastrum(diploid) 2	18.060
	CNS0095594	Slightly white alabastrum(diploid) 3	19.026
	CNS0095595	Whole white alabastrum(diploid) 2	15.723
	CNS0095596	Whole white alabastrum(diploid) 3	13.274
	CNS0095597	Whole white alabastrum(diploid) 4	11.691
	CNS0095598	Silvery flower (diploied) 1	19.297
	CNS0095599	Silvery flower (diploied) 2	15.778
	CNS0095600	Silvery flower (diploied) 3	18.838
	CNS0095601	Golden flower (diploid) 1	18.157
	CNS0095602	Golden flower (diploid) 2	17.632
	CNS0095603	Golden flower (diploid) 3	18.226
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.549
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.446
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.669
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.844
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.802
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.483
	CNS0095610	Silvery flower (tetraploid) 1	24.309
	CNS0095611	Silvery flower (tetraploid) 2	16.984
	CNS0095612	Silvery flower (tetraploid) 3	17.419
	CNS0095613	Golden flower (tetraploid) 1	15.259
	CNS0095614	Golden flower (tetraploid) 2	21.237
	CNS0095615	Golden flower (tetraploid) 3	11.672
CRA001975	CRR073297	Stem 1	17.536
	CRR073298	Stem 2	17.636
	CRR073299	Stem 3	12.784
	CRR073300	Leaf 1	15.691
	CRR073301	Leaf 2	14.107
	CRR073302	Leaf 3	9.156
	CRR073303	Juvenile bud 1	9.013
	CRR073304	Juvenile bud 2	8.098
	CRR073305	Juvenile bud 3	12.114
	CRR073306	Third green 1	7.941
	CRR073307	Third green 2	5.554
	CRR073308	Third green 3	9.023
	CRR073309	Second white 1	4.165
	CRR073310	Second white 2	9.305
	CRR073311	Second white 3	9.515
	CRR073312	Silver flowering 1	6.974
	CRR073313	Silver flowering 2	7.926
	CRR073314	Silver flowering 3	8.034
	CRR073315	Gold flowering 1	2.629
	CRR073316	Gold flowering 2	6.855
	CRR073317	Gold flowering 3	1.646
	CRR073318	Tawny withering 1	10.631
	CRR073319	Tawny withering 2	12.576
	CRR073320	Tawny withering 3	9.317