Gene detail

Detail information of GWHGAAZE017764

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007037499.1	7.77095E-69	C2H2-like zinc finger protein, putative [Theobroma cacao]
Swissprot	tr\|O65499\|ZAT3_ARATH	0.00000004	Zinc finger protein ZAT3
trEMBL	tr\|A0A061FWS6\|A0A061FWS6_THECC	3E-69	C2H2-like zinc finger protein, putative {ECO:0000313\|EMBL:EOY22000.1}
TAIR10	AT1G26610.1	4E-26	C2H2-like zinc finger protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10570356	10571099	+
GWHAAZE00000005	mRNA	10570356	10571099	+
GWHAAZE00000005	exon	10570356	10570724	+
GWHAAZE00000005	exon	10570755	10571099	+
GWHAAZE00000005	CDS	10570356	10570724	+
GWHAAZE00000005	CDS	10570755	10571099	+

Transcript Sequence
>GWHTAAZE017784 ATGGAAGAAGATCAGGAAATGAAACATGCTTGCAAGTTGTGTAACAAGAGCTTTCCCTGTGGAAGATCATTAGGAGGCCACATGAGGTCTCATGTGGTAAATTCACCTGAATTAGATTACGAAAAGCTTCATAAAAAGAAGCTTTCGTCATCTCTTAACAACGGAGGAACCAATGCTTTCATTGACGGTGGATATGGCCTAAGAGAGAATCCCAAAAAGTCATCCAAGTTTGCAGAATCAAGTGAAGATACTTCGCTTCATTACAAAGTCTGCAAAGAATGTGGTAAAGGCTTCCAATCTTGGAAGGCCTTGTTTGGCCACATGAAGTGTCACTCTGTTAAATTTTCAAACAGTGTGGATGATGAGGATATGGACATGGATGGTGAATCCGAAAATGAAATCGGAGCTCCAAGTCGAAGAAAGAGATCATCAAGAACATCCAAAAGGTACATCGCCACTACTACAAATTCATCTTCTTTCTCTATTAATGCTAAAAATGCTTCACCATCTGTTTCTGAGATTGAGCAAGAAGATGTTGCCATGTGTTTGATGATGCTTTCTAGAGATGTGGGTCTGAATTCTGTTGGTGAATCGTCTGATAACAATTCTGAGTTCTTACAAGCTCGGACTGGTCTAATAATCACTAAAATTGAGGGTAATAATTCAATCTCTAATGATGGCGATACTGTTAAGTTCAATAAACTAAGACATGGG

Network for GWHGAAZE017764

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.7	zf-C2H2_6	9	31	1.10E-06
PF13912.7	zf-C2H2_6	90	111	1.40E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.851
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.511
	SRR3591708	Shoot apex	0.527
	SRR3591709	Stem	2.500
	SRR3591710	White floral bud	0.880
	SRR3591711	White flower	0.178
	SRR3591712	Green floral bud	2.731
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.247
	SRR8316896	Juvenile bud stage	0.575
	SRR8316897	Juvenile bud stage	0.586
	SRR8316894	Third green stage	0.361
	SRR8316900	Third green stage	0.421
	SRR8316901	Third green stage	0.764
	SRR8316898	Complete white stage	0.084
	SRR8316899	Complete white stage	1.289
	SRR8316903	Complete white stage	0.231
	SRR8316902	Silver flowering stage	0.447
	SRR8316904	Silver flowering stage	0.133
	SRR8316905	Silver flowering stage	0.085
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.080
	SRR8316908	Gold flowering stage	0.071
SRP132670	SRR6706286	Control	0.010
	SRR6706287	Light intensity 50%	0.014
	SRR6706288	Light intensity 20%	0.155
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.635
	CNS0095593	Slightly white alabastrum(diploid) 2	1.158
	CNS0095594	Slightly white alabastrum(diploid) 3	0.222
	CNS0095595	Whole white alabastrum(diploid) 2	0.443
	CNS0095596	Whole white alabastrum(diploid) 3	0.263
	CNS0095597	Whole white alabastrum(diploid) 4	0.263
	CNS0095598	Silvery flower (diploied) 1	0.328
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.162
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.116
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.508
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.844
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.950
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.156
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.277
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.502
	CNS0095610	Silvery flower (tetraploid) 1	0.541
	CNS0095611	Silvery flower (tetraploid) 2	0.219
	CNS0095612	Silvery flower (tetraploid) 3	0.435
	CNS0095613	Golden flower (tetraploid) 1	0.131
	CNS0095614	Golden flower (tetraploid) 2	0.261
	CNS0095615	Golden flower (tetraploid) 3	0.446
CRA001975	CRR073297	Stem 1	0.639
	CRR073298	Stem 2	0.272
	CRR073299	Stem 3	0.313
	CRR073300	Leaf 1	0.287
	CRR073301	Leaf 2	0.072
	CRR073302	Leaf 3	0.057
	CRR073303	Juvenile bud 1	0.109
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.190
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.178
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.208
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.302
	CRR073319	Tawny withering 2	0.165
	CRR073320	Tawny withering 3	0.399