Detail information of GWHGAAZE017771


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284521.12.6334E-133PREDICTED: uncharacterized protein LOC100241642 [Vitis vinifera]
trEMBLtr|F6GT36|F6GT36_VITVI1E-133Putative uncharacterized protein {ECO:0000313|EMBL:CCB43060.1}
TAIR10AT3G29270.25E-69RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1062725610628982-
GWHAAZE00000005mRNA1062725610628982-
GWHAAZE00000005exon1062725610628013-
GWHAAZE00000005exon1062863910628722-
GWHAAZE00000005exon1062881110628982-
GWHAAZE00000005CDS1062881110628982-
GWHAAZE00000005CDS1062863910628722-
GWHAAZE00000005CDS1062725610628013-
Transcript Sequence

Network for GWHGAAZE017771

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13445.7zf-RING_UBOX1191717.80E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.347
SRR3591706second leaf12.318
SRR3591707mature leaf10.988
SRR3591708Shoot apex22.571
SRR3591709Stem24.281
SRR3591710White floral bud17.309
SRR3591711White flower16.760
SRR3591712Green floral bud17.977
SRR3591713Yellow flower17.179
SRP173429 SRR8316895Juvenile bud stage 11.054
SRR8316896Juvenile bud stage 12.610
SRR8316897Juvenile bud stage 5.057
SRR8316894Third green stage 6.212
SRR8316900Third green stage 15.436
SRR8316901Third green stage 13.725
SRR8316898Complete white stage 6.656
SRR8316899Complete white stage 19.256
SRR8316903Complete white stage 12.514
SRR8316902Silver flowering stage7.695
SRR8316904Silver flowering stage9.455
SRR8316905Silver flowering stage3.545
SRR8316906Gold flowering stage 11.526
SRR8316907Gold flowering stage 12.367
SRR8316908Gold flowering stage 13.451
SRP132670SRR6706286Control11.565
SRR6706287Light intensity 50%13.233
SRR6706288Light intensity 20%13.265
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.901
CNS0095593Slightly white alabastrum(diploid) 212.136
CNS0095594Slightly white alabastrum(diploid) 311.220
CNS0095595Whole white alabastrum(diploid) 211.191
CNS0095596Whole white alabastrum(diploid) 311.487
CNS0095597Whole white alabastrum(diploid) 410.433
CNS0095598Silvery flower (diploied) 112.525
CNS0095599Silvery flower (diploied) 28.744
CNS0095600Silvery flower (diploied) 313.565
CNS0095601Golden flower (diploid) 112.705
CNS0095602Golden flower (diploid) 216.846
CNS0095603Golden flower (diploid) 316.666
CNS0095604Slightly white alabastrum(tetraploid) 114.418
CNS0095605Slightly white alabastrum(tetraploid) 210.497
CNS0095606Slightly white alabastrum(tetraploid) 316.380
CNS0095607Whole white alabastrum(tetraploid) 19.914
CNS0095608Whole white alabastrum(tetraploid) 28.318
CNS0095609Whole white alabastrum(tetraploid) 311.168
CNS0095610Silvery flower (tetraploid) 110.268
CNS0095611Silvery flower (tetraploid) 214.904
CNS0095612Silvery flower (tetraploid) 313.194
CNS0095613Golden flower (tetraploid) 110.074
CNS0095614Golden flower (tetraploid) 210.808
CNS0095615Golden flower (tetraploid) 317.436
CRA001975CRR073297Stem 115.036
CRR073298Stem 214.259
CRR073299Stem 314.416
CRR073300Leaf 112.920
CRR073301Leaf 213.896
CRR073302Leaf 311.124
CRR073303Juvenile bud 114.807
CRR073304Juvenile bud 29.854
CRR073305Juvenile bud 314.498
CRR073306Third green 16.519
CRR073307Third green 26.312
CRR073308Third green 36.423
CRR073309Second white 16.799
CRR073310Second white 210.225
CRR073311Second white 38.067
CRR073312Silver flowering 17.128
CRR073313Silver flowering 26.123
CRR073314Silver flowering 37.457
CRR073315Gold flowering 18.731
CRR073316Gold flowering 215.429
CRR073317Gold flowering 313.928
CRR073318Tawny withering 112.650
CRR073319Tawny withering 210.646
CRR073320Tawny withering 311.414