Detail information of GWHGAAZE017785


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP18315.10unnamed protein product [Coffea canephora]
Swissprottr|Q9SYU4|PEX10_ARATH0.0000001Peroxisome biogenesis factor 10
trEMBLtr|A0A068VBV1|A0A068VBV1_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_223 {ECO:0000313|EMBL:CDP18315.1}
TAIR10AT1G18660.33E-164zinc finger (C3HC4-type RING finger) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1078097710786120-
GWHAAZE00000005mRNA1078097710786120-
GWHAAZE00000005exon1078097710781033-
GWHAAZE00000005exon1078116810781236-
GWHAAZE00000005exon1078134710781440-
GWHAAZE00000005exon1078238210782516-
GWHAAZE00000005exon1078261110782660-
GWHAAZE00000005exon1078286910782905-
GWHAAZE00000005exon1078302810783089-
GWHAAZE00000005exon1078318910783227-
GWHAAZE00000005exon1078341610783605-
GWHAAZE00000005exon1078368010783740-
GWHAAZE00000005exon1078385110784032-
GWHAAZE00000005exon1078417510784236-
GWHAAZE00000005exon1078441810784504-
GWHAAZE00000005exon1078460610784690-
GWHAAZE00000005exon1078483110784913-
GWHAAZE00000005exon1078584810785949-
GWHAAZE00000005exon1078605510786120-
GWHAAZE00000005CDS1078605510786120-
GWHAAZE00000005CDS1078584810785949-
GWHAAZE00000005CDS1078483110784913-
GWHAAZE00000005CDS1078460610784690-
GWHAAZE00000005CDS1078441810784504-
GWHAAZE00000005CDS1078417510784236-
GWHAAZE00000005CDS1078385110784032-
GWHAAZE00000005CDS1078368010783740-
GWHAAZE00000005CDS1078341610783605-
GWHAAZE00000005CDS1078318910783227-
GWHAAZE00000005CDS1078302810783089-
GWHAAZE00000005CDS1078286910782905-
GWHAAZE00000005CDS1078261110782660-
GWHAAZE00000005CDS1078238210782516-
GWHAAZE00000005CDS1078134710781440-
GWHAAZE00000005CDS1078116810781236-
GWHAAZE00000005CDS1078097710781033-
Transcript Sequence

Network for GWHGAAZE017785

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13923.7zf-C3HC4_21922294.10E-13
PF02190.17LON_substr_bdg2804771.30E-18
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.930
SRR3591706second leaf25.378
SRR3591707mature leaf23.888
SRR3591708Shoot apex21.540
SRR3591709Stem24.015
SRR3591710White floral bud12.155
SRR3591711White flower33.839
SRR3591712Green floral bud10.963
SRR3591713Yellow flower23.088
SRP173429 SRR8316895Juvenile bud stage 10.855
SRR8316896Juvenile bud stage 15.660
SRR8316897Juvenile bud stage 6.717
SRR8316894Third green stage 5.851
SRR8316900Third green stage 18.634
SRR8316901Third green stage 24.251
SRR8316898Complete white stage 13.313
SRR8316899Complete white stage 32.217
SRR8316903Complete white stage 19.635
SRR8316902Silver flowering stage23.745
SRR8316904Silver flowering stage26.446
SRR8316905Silver flowering stage16.168
SRR8316906Gold flowering stage 35.150
SRR8316907Gold flowering stage 24.023
SRR8316908Gold flowering stage 28.889
SRP132670SRR6706286Control26.767
SRR6706287Light intensity 50%23.101
SRR6706288Light intensity 20%22.722
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.634
CNS0095593Slightly white alabastrum(diploid) 210.404
CNS0095594Slightly white alabastrum(diploid) 310.782
CNS0095595Whole white alabastrum(diploid) 28.708
CNS0095596Whole white alabastrum(diploid) 38.353
CNS0095597Whole white alabastrum(diploid) 413.086
CNS0095598Silvery flower (diploied) 133.230
CNS0095599Silvery flower (diploied) 226.720
CNS0095600Silvery flower (diploied) 345.921
CNS0095601Golden flower (diploid) 121.711
CNS0095602Golden flower (diploid) 232.417
CNS0095603Golden flower (diploid) 330.890
CNS0095604Slightly white alabastrum(tetraploid) 19.937
CNS0095605Slightly white alabastrum(tetraploid) 27.074
CNS0095606Slightly white alabastrum(tetraploid) 318.856
CNS0095607Whole white alabastrum(tetraploid) 16.523
CNS0095608Whole white alabastrum(tetraploid) 26.364
CNS0095609Whole white alabastrum(tetraploid) 312.608
CNS0095610Silvery flower (tetraploid) 176.800
CNS0095611Silvery flower (tetraploid) 246.792
CNS0095612Silvery flower (tetraploid) 321.663
CNS0095613Golden flower (tetraploid) 132.996
CNS0095614Golden flower (tetraploid) 253.565
CNS0095615Golden flower (tetraploid) 313.559
CRA001975CRR073297Stem 112.651
CRR073298Stem 212.627
CRR073299Stem 39.563
CRR073300Leaf 115.493
CRR073301Leaf 218.496
CRR073302Leaf 38.752
CRR073303Juvenile bud 115.732
CRR073304Juvenile bud 210.995
CRR073305Juvenile bud 316.346
CRR073306Third green 17.164
CRR073307Third green 25.667
CRR073308Third green 36.316
CRR073309Second white 19.168
CRR073310Second white 214.363
CRR073311Second white 312.566
CRR073312Silver flowering 14.803
CRR073313Silver flowering 23.834
CRR073314Silver flowering 34.541
CRR073315Gold flowering 117.937
CRR073316Gold flowering 220.603
CRR073317Gold flowering 39.934
CRR073318Tawny withering 113.897
CRR073319Tawny withering 216.107
CRR073320Tawny withering 315.382