Gene detail

Detail information of GWHGAAZE017795

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007037404.1	1.8632E-179	NAC domain protein, IPR003441 [Theobroma cacao]
Swissprot	tr\|Q9FLJ2\|NC100_ARATH	4E-149	NAC domain-containing protein 100
trEMBL	tr\|A0A061FWI7\|A0A061FWI7_THECC	7E-180	NAC domain protein, IPR003441 {ECO:0000313\|EMBL:EOY21905.1}
TAIR10	AT5G61430.1	5E-113	NAC domain containing protein 100

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10890935	10892234	-
GWHAAZE00000005	mRNA	10890935	10892234	-
GWHAAZE00000005	exon	10890935	10891540	-
GWHAAZE00000005	exon	10891666	10891943	-
GWHAAZE00000005	exon	10892048	10892234	-
GWHAAZE00000005	CDS	10892048	10892234	-
GWHAAZE00000005	CDS	10891666	10891943	-
GWHAAZE00000005	CDS	10890935	10891540	-

Transcript Sequence
>GWHTAAZE017815 ATGGAGAATTTCTCTGGAATTGAGAAGGAAGATGATCGGATGGAATTACCGCCAGGATTTCGATTCCATCCATCTGATGAAGAGCTGATTACTCACTATTTATCTAAGAAGTATCTTGATAACAATTTCTCTGCAAGAGCTATTGGAGAGGTGGATATGAACAAGGTTGAGCCTTGGGATTTGCCATGGAAAGCTAAGATGGGGGAAAAGGAGTGGTATTTTTTCTGTGTGAAAGATAGAAAATACCCAACTGGGACAAGGACAAACAGAGCTACTGCTGCTGGATACTGGAAAGCCACTGGAAAGGATAAGGAAATTTTCCGAGGAAAATTTCTGGTTGGGATGAAAAAAACGCTGGTTTTCTACAAGGGGAGAGCTCCGAAAGGGGAGAAAAGCAATTGGGTCAGTCATGAATACAGATTGGAGGGTAAATTCTCTGTCCATAACCTACCCAAAACAGCAGAGAATGAGTGGGTGATTTGTAGGGTATTTCAGAAAAGTTCTGGAGGAAAGAAAGTTTATATTTCGGGTTTACCAGGATCGAATTCCTTTGGAAATGATATGATTCCTTCATTTCTTCCCCCATTAACGGACTCTTCGAGTTTTAGGACTAAACAGACCGTATCAGACTCTCACGTGACCTGCTTCTCCAATCCAATTGATACTCAAAAAACCAACAAAGACATGTTTTATTATCTCAACAACCCCATTTACCCTTTCTCTTCGAATTCCTCAGATATTTTCCCAAGAAATCCTCTTTCAAACATGTTTTTCAGAGGCCAATCAGGTCCTATTCAAGAGAATTTGCAGTACCCAGGTACAAATCAATTTCCAGACCATGCAATTTTGAGGGGATTAATTGAAAACAATGGTGAAAACATGATGAGACACGCCCTCAAAACAGAGGAGATGGCTAGTATCTCGCAAGAAACATGTTTAAGCACCGATATGAACACCGAAAACTCTTCTGTTGTGTCAAATCTTGAAGTGGGAAGGAGTTCATTTGATGATCCAGAAGCACCATCGGCTTCTGTTGGACCGATAGATCTTGATTCCCTTTGGAATTATTGA

Network for GWHGAAZE017795

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	17	141	9.10E-36

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.516
	SRR3591706	second leaf	1.634
	SRR3591707	mature leaf	6.780
	SRR3591708	Shoot apex	0.753
	SRR3591709	Stem	3.627
	SRR3591710	White floral bud	24.819
	SRR3591711	White flower	60.508
	SRR3591712	Green floral bud	13.070
	SRR3591713	Yellow flower	89.593
SRP173429	SRR8316895	Juvenile bud stage	4.886
	SRR8316896	Juvenile bud stage	8.926
	SRR8316897	Juvenile bud stage	2.836
	SRR8316894	Third green stage	3.221
	SRR8316900	Third green stage	7.055
	SRR8316901	Third green stage	5.818
	SRR8316898	Complete white stage	4.696
	SRR8316899	Complete white stage	11.223
	SRR8316903	Complete white stage	9.254
	SRR8316902	Silver flowering stage	10.748
	SRR8316904	Silver flowering stage	10.584
	SRR8316905	Silver flowering stage	3.185
	SRR8316906	Gold flowering stage	14.560
	SRR8316907	Gold flowering stage	26.529
	SRR8316908	Gold flowering stage	17.649
SRP132670	SRR6706286	Control	0.826
	SRR6706287	Light intensity 50%	1.353
	SRR6706288	Light intensity 20%	1.136
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.271
	CNS0095593	Slightly white alabastrum(diploid) 2	3.915
	CNS0095594	Slightly white alabastrum(diploid) 3	8.795
	CNS0095595	Whole white alabastrum(diploid) 2	4.107
	CNS0095596	Whole white alabastrum(diploid) 3	3.039
	CNS0095597	Whole white alabastrum(diploid) 4	4.671
	CNS0095598	Silvery flower (diploied) 1	12.942
	CNS0095599	Silvery flower (diploied) 2	8.957
	CNS0095600	Silvery flower (diploied) 3	29.139
	CNS0095601	Golden flower (diploid) 1	7.723
	CNS0095602	Golden flower (diploid) 2	42.597
	CNS0095603	Golden flower (diploid) 3	39.090
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.169
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.317
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.805
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.331
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.339
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.068
	CNS0095610	Silvery flower (tetraploid) 1	44.774
	CNS0095611	Silvery flower (tetraploid) 2	23.031
	CNS0095612	Silvery flower (tetraploid) 3	22.633
	CNS0095613	Golden flower (tetraploid) 1	33.515
	CNS0095614	Golden flower (tetraploid) 2	50.524
	CNS0095615	Golden flower (tetraploid) 3	38.437
CRA001975	CRR073297	Stem 1	5.911
	CRR073298	Stem 2	5.564
	CRR073299	Stem 3	4.430
	CRR073300	Leaf 1	1.689
	CRR073301	Leaf 2	1.181
	CRR073302	Leaf 3	0.938
	CRR073303	Juvenile bud 1	1.782
	CRR073304	Juvenile bud 2	0.651
	CRR073305	Juvenile bud 3	1.782
	CRR073306	Third green 1	0.347
	CRR073307	Third green 2	2.138
	CRR073308	Third green 3	1.692
	CRR073309	Second white 1	1.540
	CRR073310	Second white 2	3.272
	CRR073311	Second white 3	2.224
	CRR073312	Silver flowering 1	2.543
	CRR073313	Silver flowering 2	1.680
	CRR073314	Silver flowering 3	3.168
	CRR073315	Gold flowering 1	0.597
	CRR073316	Gold flowering 2	0.416
	CRR073317	Gold flowering 3	0.539
	CRR073318	Tawny withering 1	1.615
	CRR073319	Tawny withering 2	2.838
	CRR073320	Tawny withering 3	1.087