Gene detail

Detail information of GWHGAAZE017804

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006477466.1	4.1156E-159	PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like [Citrus sinensis]
Swissprot	tr\|P27521\|CA4_ARATH	1E-152	Chlorophyll a-b binding protein 4, chloroplastic (Precursor)
trEMBL	tr\|B9RLX2\|B9RLX2_RICCO	2E-158	Chlorophyll A/B binding protein, putative {ECO:0000313\|EMBL:EEF47847.1}
TAIR10	AT3G47470.1	5E-119	light-harvesting chlorophyll-protein complex I subunit A4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	10994262	10995667	+
GWHAAZE00000005	mRNA	10994262	10995667	+
GWHAAZE00000005	exon	10994262	10994464	+
GWHAAZE00000005	exon	10994970	10995385	+
GWHAAZE00000005	exon	10995531	10995667	+
GWHAAZE00000005	CDS	10994262	10994464	+
GWHAAZE00000005	CDS	10994970	10995385	+
GWHAAZE00000005	CDS	10995531	10995667	+

Transcript Sequence
>GWHTAAZE017824 ATGGCCGCCATAACCACACAAGCTCCCATTGCCGTTTTCCGCTCATCTGCCTCTAAATCAAGGTTCATCACCGGATTGTCCCGTAAGCTTAACAGAAATTTGGCCTTTAAACCGCCACCTTCTTCATCGAGCTCTTTCAAGGTTGAAGCCAAGAAAGGCGAATGGTTGCCTGGCCTAACCTCCCCAGCTTACCTCACCGGCAGTCTTCCCGGTGACAATGGGTTTGACCCTCTGGCGCTTGCAGAGGACCCAGAGAACCTAAAGTGGTTCGTTCAGGCAGAGCTCGTCAACAGTCGATGGGCCATGTTGGGAGTTGCAGGTATGCTCTTGCCGGAAGTATTCACAAAGATGGGACTCATCAATGCCCCTGCTTGGTACGATGCTGGAAAATCTGAGTACTTTGCTTCATCATCGACCCTTTTCGTGATCGAGTTCATATTGTTCCACTATGTCGAGCTGCGAAGGTGGCAAGATATTAAGAACCCCGGAAGTGTAAACCAAGACCCAATCTTCAAGAGCTACAGCTTGCCGCCCAATGAGGTCGGCTACCCTGGTGGCATCTTTAATCCCCTCAACTTCGCACCCACCCTCGAGGCTAAAGAGAAAGAACTTGCCAATGGGAGGTTAGCTATGTTGGCATTCTTGGGGTTTGTGGTTCAACACAATGTGACCGGCAAAGGGCCATTTGAGAACCTGGCTCAGCACATCTCGGACCCATGGCACAACACCATTGTTCAAACACTCAACGGTTCATAG

Network for GWHGAAZE017804

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	62	221	4.40E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08910	LHCA4	Metabolic pathways	map01100
K08910	LHCA4	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	47.943
	SRR3591706	second leaf	1740.355
	SRR3591707	mature leaf	268.417
	SRR3591708	Shoot apex	200.300
	SRR3591709	Stem	26.398
	SRR3591710	White floral bud	2.968
	SRR3591711	White flower	1.723
	SRR3591712	Green floral bud	5.378
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	6.844
	SRR8316896	Juvenile bud stage	3.098
	SRR8316897	Juvenile bud stage	2.357
	SRR8316894	Third green stage	1.687
	SRR8316900	Third green stage	1.254
	SRR8316901	Third green stage	1.888
	SRR8316898	Complete white stage	0.298
	SRR8316899	Complete white stage	3.064
	SRR8316903	Complete white stage	0.862
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.428
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.084
	SRR8316907	Gold flowering stage	0.140
	SRR8316908	Gold flowering stage	0.072
SRP132670	SRR6706286	Control	1.758
	SRR6706287	Light intensity 50%	1.244
	SRR6706288	Light intensity 20%	1.350
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.257
	CNS0095593	Slightly white alabastrum(diploid) 2	3.037
	CNS0095594	Slightly white alabastrum(diploid) 3	6.113
	CNS0095595	Whole white alabastrum(diploid) 2	2.906
	CNS0095596	Whole white alabastrum(diploid) 3	1.353
	CNS0095597	Whole white alabastrum(diploid) 4	0.595
	CNS0095598	Silvery flower (diploied) 1	13.024
	CNS0095599	Silvery flower (diploied) 2	18.887
	CNS0095600	Silvery flower (diploied) 3	2.428
	CNS0095601	Golden flower (diploid) 1	13.145
	CNS0095602	Golden flower (diploid) 2	3.426
	CNS0095603	Golden flower (diploid) 3	4.736
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.044
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.928
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.629
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.040
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.599
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.209
	CNS0095610	Silvery flower (tetraploid) 1	0.595
	CNS0095611	Silvery flower (tetraploid) 2	1.903
	CNS0095612	Silvery flower (tetraploid) 3	0.813
	CNS0095613	Golden flower (tetraploid) 1	0.246
	CNS0095614	Golden flower (tetraploid) 2	2.413
	CNS0095615	Golden flower (tetraploid) 3	0.561
CRA001975	CRR073297	Stem 1	1.522
	CRR073298	Stem 2	1.437
	CRR073299	Stem 3	2.807
	CRR073300	Leaf 1	0.600
	CRR073301	Leaf 2	1.134
	CRR073302	Leaf 3	0.560
	CRR073303	Juvenile bud 1	0.268
	CRR073304	Juvenile bud 2	0.342
	CRR073305	Juvenile bud 3	0.365
	CRR073306	Third green 1	0.389
	CRR073307	Third green 2	0.146
	CRR073308	Third green 3	0.404
	CRR073309	Second white 1	0.060
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.277
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	21.768
	CRR073316	Gold flowering 2	16.589
	CRR073317	Gold flowering 3	19.685
	CRR073318	Tawny withering 1	4.784
	CRR073319	Tawny withering 2	5.057
	CRR073320	Tawny withering 3	5.681