Gene detail

Detail information of GWHGAAZE017807

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP12294.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8LFV3\|CDF3_ARATH	5E-92	Cyclic dof factor 3
trEMBL	tr\|A0A068UVL6\|A0A068UVL6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_63 {ECO:0000313\|EMBL:CDP12294.1}
TAIR10	AT3G47500.1	2E-71	cycling DOF factor 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	11016413	11019270	-
GWHAAZE00000005	mRNA	11016413	11019270	-
GWHAAZE00000005	exon	11016413	11017627	-
GWHAAZE00000005	exon	11019037	11019270	-
GWHAAZE00000005	CDS	11019037	11019270	-
GWHAAZE00000005	CDS	11016413	11017627	-

Transcript Sequence
>GWHTAAZE017827 ATGATGGAAGTTAAGGACCAGGGGATCAAGCTGTTTGGGAAGAAGATTGCGTTGCCGGAAAACGGGAATATCCCGGTCTTCTTCGGTGATGTTGCCGGAGGAGACTATTCTGTTGAAGTTTTTCATAAGAATTATATTTCTTCTGATCGTGATATTGTTTTGATGGAGACGAATGAGACTTGTTTGGAAGACAACATAGTAGTGAAAGAAGGACAAGAAGAAGAGACTGAGAAGGATCATCTAGCAGAAGAACACGGTGAGACTAAACCAGAAGAATCAAAAAATTCAAAAGCATCTCCTGAATCAGATGAAAACCCTAAAACTCCCTCTATTGACGAAGAATCTCCAACATTAACACCTCCAAAAACTGAAAATGATCAGAGTGATACGACAAACTCGAAACAGAAAGCCCTAAAGAAGCCCGACAAAATTCTCCCATGCCCTCGTTGTAATAGCATGGATACAAAATTCTGCTACTACAACAACTACAACGTTAATCAGCCCCGTCATTTCTGCAAGAGCTGTCAGAGATACTGGACGGCCGGTGGTACCATGAGGAATGTTCCGGTAGGAGCCGGACGCCGCAAGAACAAGAATTCCACCTTTAATTGTAATCACATCACGATCTCCGAAGCCCTCCAAGCTGCTCGAATTGACGCTCCAAACGGGGCCCATTGCCCTCCATTCAAAACCAACGGCACGGTGCTCTCCTTTAACTCGGGCCCACATTTGTCTGAATCCATGGCTTGTGTTTTGAACCTGGCAGAAAACAAATCACCAAATGGTGCTCAAAATGGCGAGGATTGCTCTAGTGCATCTTCTGTCACAGTATCTGTATCAGCTTCAACTTCAATGATTCAAGCGGTGGAAAATGGACATCGGGATCTATCCATGCCAAATATTCATTGCTACCCATCTCAAGTTCCATATCTACCTGGGGTTCCTTGGTCTTATCCTTGGAATTCTACGGTTCCCATGCCAATTCCTTCGGTGATTCCAGTGCCGTTTTACCCTCCACCTTATTGGAATTGTAATGTCCCCGGTTCTTGGAGTATTAATCCTTGGTTGTCTCCTCCTCCTACACCAAACCAAAAGGAGGCGGTGGTGGTGGCCTCTGCTCCTTATTCGCCGACTTTAGGGAAGCATTCAAGGGATGGGGATTTGATTAAACCAAGCAATCTTGAACGGAGGGAGCCATTGGTAGAGAAGAATTCAGAGAGTTGTATTTTGATTCCGAAAATTTTAAGAATTGATGACCCTGATGAAGCTGCAAAAAGTTCTATATGGGAAACTCTTGGGATTAAGCATGATTCCGTAAGCAGGGGAGGTCTTTTCAAGGCCTTTGAAAGGAAGGGTGATGAAAAGAATCATGTAAACACAACCTCTCCGGTTTTGCAGGCTAACCCTGCAGCCATGTCTAGGTCCCTCAGCTTCCAGGAGAGAGCCTAA

Network for GWHGAAZE017807

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02701.16	zf-Dof	142	199	2.40E-32

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	24.782
	SRR3591706	second leaf	28.289
	SRR3591707	mature leaf	57.031
	SRR3591708	Shoot apex	22.667
	SRR3591709	Stem	23.188
	SRR3591710	White floral bud	85.162
	SRR3591711	White flower	67.294
	SRR3591712	Green floral bud	39.262
	SRR3591713	Yellow flower	52.529
SRP173429	SRR8316895	Juvenile bud stage	13.884
	SRR8316896	Juvenile bud stage	27.439
	SRR8316897	Juvenile bud stage	9.809
	SRR8316894	Third green stage	8.233
	SRR8316900	Third green stage	30.809
	SRR8316901	Third green stage	28.290
	SRR8316898	Complete white stage	33.767
	SRR8316899	Complete white stage	57.103
	SRR8316903	Complete white stage	59.669
	SRR8316902	Silver flowering stage	25.679
	SRR8316904	Silver flowering stage	42.655
	SRR8316905	Silver flowering stage	24.989
	SRR8316906	Gold flowering stage	60.242
	SRR8316907	Gold flowering stage	52.302
	SRR8316908	Gold flowering stage	64.881
SRP132670	SRR6706286	Control	39.703
	SRR6706287	Light intensity 50%	40.244
	SRR6706288	Light intensity 20%	40.676
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.483
	CNS0095593	Slightly white alabastrum(diploid) 2	13.153
	CNS0095594	Slightly white alabastrum(diploid) 3	13.769
	CNS0095595	Whole white alabastrum(diploid) 2	13.109
	CNS0095596	Whole white alabastrum(diploid) 3	15.470
	CNS0095597	Whole white alabastrum(diploid) 4	12.946
	CNS0095598	Silvery flower (diploied) 1	19.255
	CNS0095599	Silvery flower (diploied) 2	17.781
	CNS0095600	Silvery flower (diploied) 3	59.246
	CNS0095601	Golden flower (diploid) 1	22.135
	CNS0095602	Golden flower (diploid) 2	39.579
	CNS0095603	Golden flower (diploid) 3	37.698
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.714
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.770
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.096
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.858
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.018
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.473
	CNS0095610	Silvery flower (tetraploid) 1	51.151
	CNS0095611	Silvery flower (tetraploid) 2	63.232
	CNS0095612	Silvery flower (tetraploid) 3	91.452
	CNS0095613	Golden flower (tetraploid) 1	45.828
	CNS0095614	Golden flower (tetraploid) 2	53.928
	CNS0095615	Golden flower (tetraploid) 3	62.602
CRA001975	CRR073297	Stem 1	14.546
	CRR073298	Stem 2	11.607
	CRR073299	Stem 3	12.813
	CRR073300	Leaf 1	14.026
	CRR073301	Leaf 2	13.194
	CRR073302	Leaf 3	15.367
	CRR073303	Juvenile bud 1	20.365
	CRR073304	Juvenile bud 2	35.961
	CRR073305	Juvenile bud 3	22.255
	CRR073306	Third green 1	112.767
	CRR073307	Third green 2	93.403
	CRR073308	Third green 3	97.610
	CRR073309	Second white 1	76.644
	CRR073310	Second white 2	66.027
	CRR073311	Second white 3	59.020
	CRR073312	Silver flowering 1	38.881
	CRR073313	Silver flowering 2	29.568
	CRR073314	Silver flowering 3	16.847
	CRR073315	Gold flowering 1	9.056
	CRR073316	Gold flowering 2	11.462
	CRR073317	Gold flowering 3	12.157
	CRR073318	Tawny withering 1	9.329
	CRR073319	Tawny withering 2	8.634
	CRR073320	Tawny withering 3	14.074