Gene detail

Detail information of GWHGAAZE017817

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI15225.3	9.02353E-96	unnamed protein product [Vitis vinifera]
Swissprot	tr\|P81392\|MYB06_ANTMA	3E-95	Myb-related protein 306
trEMBL	tr\|M0TJD8\|M0TJD8_MUSAM	5E-95	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P21010_001}
TAIR10	AT1G08810.1	2E-69	myb domain protein 60

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	11132951	11134806	-
GWHAAZE00000005	mRNA	11132951	11134806	-
GWHAAZE00000005	exon	11132951	11133319	-
GWHAAZE00000005	exon	11133478	11133634	-
GWHAAZE00000005	exon	11134068	11134197	-
GWHAAZE00000005	exon	11134409	11134509	-
GWHAAZE00000005	exon	11134778	11134806	-
GWHAAZE00000005	CDS	11134778	11134806	-
GWHAAZE00000005	CDS	11134409	11134509	-
GWHAAZE00000005	CDS	11134068	11134197	-
GWHAAZE00000005	CDS	11133478	11133634	-
GWHAAZE00000005	CDS	11132951	11133319	-

Transcript Sequence
>GWHTAAZE017837 ATGTTCACTAGCTCCTCATATCATACTTTGGTGAAGAAAGGACCCTGGACTCCCGAAGAAGACATCATCCTCGTCTCTTACATTCAAGATCACGGTCCTGGCAACTGGAGAGCCGTTCCCACTAATACTGGTTTGCTTAGATGTAGTAAGAGTTGTAGGCTTAGATGGACTAATTATCTTCGACCTGGCATCAAACGTGGTAACTTCACCGATCACGAGGAGAAGATGATCATCCACCTCCAAGCTCTACTTGGCAACAGATGGGCTGCCATAGCTTCCTACCTTCCCCAGAGAACAGACAATGACATAAAAAATTACTGGAACACCCATCTCAAAAAGAAACTCAACAAGATACAGGGAACGATGAACATGATAACCAAGGTGGACACTCACACACTCAATCACCATTCCCCAAGGACACCTACTTACGCTTCGAGCACAGCCAATATATCCCGATTGCTCGAAAATTGGATGAAAAACTCCCCAAAATCATCCCAAACAAGCTCAGATATAACTCACGAGAACTCGTTTAGTACTAATCCGATTGGATTAACAGGTTCCAGTCCTAGCGAAGGGGTGCTTAGTGAAACAACACCCGAGGGTTGTTTCGAGTCTTTTATAAGCTTCAACTCGTCAAACTCCGAATCAGTATCGGATGAGAGTAAGCCGTGTTTGGATGCAAAAATGCCTCTAACTTTGCTTGAGAAATGGCTTTTTGATGATGGAGTTGGTCCACAAGCTGGGGAGGATCAGGTGCTAATGGACATGTCTTTTGAGGAGTTTTAA

Network for GWHGAAZE017817

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	13	60	4.40E-14
PF00249.32	Myb_DNA-binding	66	111	4.90E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.209
	SRR3591706	second leaf	4.416
	SRR3591707	mature leaf	5.519
	SRR3591708	Shoot apex	19.411
	SRR3591709	Stem	8.232
	SRR3591710	White floral bud	18.524
	SRR3591711	White flower	21.651
	SRR3591712	Green floral bud	19.654
	SRR3591713	Yellow flower	4.914
SRP173429	SRR8316895	Juvenile bud stage	32.256
	SRR8316896	Juvenile bud stage	32.326
	SRR8316897	Juvenile bud stage	15.996
	SRR8316894	Third green stage	9.898
	SRR8316900	Third green stage	17.139
	SRR8316901	Third green stage	17.170
	SRR8316898	Complete white stage	1.613
	SRR8316899	Complete white stage	37.308
	SRR8316903	Complete white stage	4.652
	SRR8316902	Silver flowering stage	1.561
	SRR8316904	Silver flowering stage	2.385
	SRR8316905	Silver flowering stage	0.895
	SRR8316906	Gold flowering stage	3.552
	SRR8316907	Gold flowering stage	0.900
	SRR8316908	Gold flowering stage	4.486
SRP132670	SRR6706286	Control	14.106
	SRR6706287	Light intensity 50%	15.068
	SRR6706288	Light intensity 20%	13.510
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.959
	CNS0095593	Slightly white alabastrum(diploid) 2	17.934
	CNS0095594	Slightly white alabastrum(diploid) 3	26.328
	CNS0095595	Whole white alabastrum(diploid) 2	21.722
	CNS0095596	Whole white alabastrum(diploid) 3	2.710
	CNS0095597	Whole white alabastrum(diploid) 4	12.898
	CNS0095598	Silvery flower (diploied) 1	57.292
	CNS0095599	Silvery flower (diploied) 2	41.489
	CNS0095600	Silvery flower (diploied) 3	21.746
	CNS0095601	Golden flower (diploid) 1	49.414
	CNS0095602	Golden flower (diploid) 2	37.590
	CNS0095603	Golden flower (diploid) 3	35.202
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.465
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.053
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.584
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.040
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.129
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.512
	CNS0095610	Silvery flower (tetraploid) 1	5.854
	CNS0095611	Silvery flower (tetraploid) 2	6.741
	CNS0095612	Silvery flower (tetraploid) 3	4.840
	CNS0095613	Golden flower (tetraploid) 1	6.129
	CNS0095614	Golden flower (tetraploid) 2	7.046
	CNS0095615	Golden flower (tetraploid) 3	1.979
CRA001975	CRR073297	Stem 1	23.597
	CRR073298	Stem 2	19.379
	CRR073299	Stem 3	14.002
	CRR073300	Leaf 1	24.978
	CRR073301	Leaf 2	40.422
	CRR073302	Leaf 3	13.548
	CRR073303	Juvenile bud 1	13.047
	CRR073304	Juvenile bud 2	12.877
	CRR073305	Juvenile bud 3	19.208
	CRR073306	Third green 1	4.170
	CRR073307	Third green 2	2.317
	CRR073308	Third green 3	3.764
	CRR073309	Second white 1	1.852
	CRR073310	Second white 2	1.625
	CRR073311	Second white 3	1.373
	CRR073312	Silver flowering 1	0.053
	CRR073313	Silver flowering 2	0.642
	CRR073314	Silver flowering 3	1.206
	CRR073315	Gold flowering 1	15.756
	CRR073316	Gold flowering 2	11.625
	CRR073317	Gold flowering 3	12.403
	CRR073318	Tawny withering 1	2.698
	CRR073319	Tawny withering 2	5.686
	CRR073320	Tawny withering 3	3.103