Gene detail

Detail information of GWHGAAZE017820

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002275944.1	0	PREDICTED: activating signal cointegrator 1 [Vitis vinifera]
trEMBL	tr\|D7SIC5\|D7SIC5_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15235.3}
TAIR10	AT3G47610.1	5E-120	transcription regulators;zinc ion binding

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	11181170	11184647	+
GWHAAZE00000005	mRNA	11181170	11184647	+
GWHAAZE00000005	exon	11181170	11181319	+
GWHAAZE00000005	exon	11183004	11183645	+
GWHAAZE00000005	exon	11183726	11183824	+
GWHAAZE00000005	exon	11184360	11184647	+
GWHAAZE00000005	CDS	11181170	11181319	+
GWHAAZE00000005	CDS	11183004	11183645	+
GWHAAZE00000005	CDS	11183726	11183824	+
GWHAAZE00000005	CDS	11184360	11184647	+

Transcript Sequence
>GWHTAAZE017840 ATGGAGTCGCCGGGGCAATGGCTAGAGAAGGCGTTGCTTAATCTGTGTTCGAAGATCGAGACGGGGTTGGATTTCGATGGCGATCTCATATCAGGACTCGTTTCCTACTGTGAGCTCGCTTCTCCGCTTGACGCCAAAGAATACCTCGATAATATCATTGGCCAAGAAGCTGGGAAGAGTGTGATCGAAGAATACTTACAGAGAAGAGGCCATTCAGATATTGGCACCAGCAACCTAAAAACTCCAACCAGCAAATTACATGCATACGTCAAACCACCCTCGAATGAAAGCATGATTGCTAAAAAGCCATTAAGAGCACCAAAAGAGGTTACAGTCTCCTCTAGAAAGGATAATGGGGTTCCAACGGAAACAAGCGAACAGCGCAACATACATAAAACAAATCAAGGCAATTCTAGAAAGAAAAAAACTGGGAAAGTTGTTAATCTTGCAGAGGCTGCAAAGGGATCAATTGTATTCCAGCAAGGGAAACCATGTTCTTGCCAAGCCCGTAGGCATAGACTAGTGAGTAATTGTTTATCTTGTGGGAAGATTGTTTGTGAACAAGAAGGAGAGGGGCCTTGTAGCTTTTGTGGTGCTCTTGTACTGAAGGAAGGAAGCCAATATGCTGGTTTAGATGAAGGTGTGGTGCTACTATCAGATGCCGAGGCTGCAGCTGAAGCTTATGCTAAGAGGCTTGTAGAATATGACCGGGACTCTGCAGCACGTACCACTGTTATAGATGACCAAAGTGACTACTACGAGATCGAGGGGAATAGCTGGCTGTCAATGGAGGAAAAGGAACTTCTAAGGAAGAAAAAAGAGGAGATAGAAGAGGCTGAACGGGCCAAACGAAGTAAAGTAATTGTGTCTTTCGACCTGGTTGGCCGCAAGGTGCTTATGAACGAAGATGAAGTTTCAGAAGATACGCAGAACACTTTACTGCTTCGACCGCCTGATGAAAGAGAAGCAAACCGTATTAGACCGAACCCGTCCCTAAGAATACAACCAGTATTTGTGGACCCAGGTCCAACCAAGAAAACATCCTTCTCCAAGGGGAATAATCATTTGAACAGAAGTCTACCTAATGGCCTTTGCTTGGAGATTAGTGGGAGGGTGCAGCATGATACCAAGGAATTAAAAGGTCCTATGCTAGACGAAGACCAGCTTGTAACTGCTTGA

Network for GWHGAAZE017820

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0010

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06221.14	zf-C2HC5	163	204	7.00E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005634	cellular_component	nucleus
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.988
	SRR3591706	second leaf	9.924
	SRR3591707	mature leaf	14.078
	SRR3591708	Shoot apex	17.514
	SRR3591709	Stem	20.498
	SRR3591710	White floral bud	26.021
	SRR3591711	White flower	44.584
	SRR3591712	Green floral bud	25.013
	SRR3591713	Yellow flower	35.096
SRP173429	SRR8316895	Juvenile bud stage	21.818
	SRR8316896	Juvenile bud stage	35.468
	SRR8316897	Juvenile bud stage	14.776
	SRR8316894	Third green stage	13.942
	SRR8316900	Third green stage	40.554
	SRR8316901	Third green stage	43.938
	SRR8316898	Complete white stage	13.964
	SRR8316899	Complete white stage	47.226
	SRR8316903	Complete white stage	28.617
	SRR8316902	Silver flowering stage	23.265
	SRR8316904	Silver flowering stage	27.323
	SRR8316905	Silver flowering stage	12.923
	SRR8316906	Gold flowering stage	48.279
	SRR8316907	Gold flowering stage	46.243
	SRR8316908	Gold flowering stage	49.858
SRP132670	SRR6706286	Control	46.277
	SRR6706287	Light intensity 50%	43.359
	SRR6706288	Light intensity 20%	43.142
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.880
	CNS0095593	Slightly white alabastrum(diploid) 2	31.019
	CNS0095594	Slightly white alabastrum(diploid) 3	32.805
	CNS0095595	Whole white alabastrum(diploid) 2	30.198
	CNS0095596	Whole white alabastrum(diploid) 3	29.105
	CNS0095597	Whole white alabastrum(diploid) 4	23.866
	CNS0095598	Silvery flower (diploied) 1	30.474
	CNS0095599	Silvery flower (diploied) 2	26.729
	CNS0095600	Silvery flower (diploied) 3	41.139
	CNS0095601	Golden flower (diploid) 1	25.273
	CNS0095602	Golden flower (diploid) 2	35.072
	CNS0095603	Golden flower (diploid) 3	37.624
	CNS0095604	Slightly white alabastrum(tetraploid) 1	28.154
	CNS0095605	Slightly white alabastrum(tetraploid) 2	25.334
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.977
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.124
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.631
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.925
	CNS0095610	Silvery flower (tetraploid) 1	40.290
	CNS0095611	Silvery flower (tetraploid) 2	38.958
	CNS0095612	Silvery flower (tetraploid) 3	38.665
	CNS0095613	Golden flower (tetraploid) 1	29.854
	CNS0095614	Golden flower (tetraploid) 2	41.031
	CNS0095615	Golden flower (tetraploid) 3	29.832
CRA001975	CRR073297	Stem 1	29.689
	CRR073298	Stem 2	32.096
	CRR073299	Stem 3	24.045
	CRR073300	Leaf 1	32.957
	CRR073301	Leaf 2	32.694
	CRR073302	Leaf 3	20.216
	CRR073303	Juvenile bud 1	25.814
	CRR073304	Juvenile bud 2	24.370
	CRR073305	Juvenile bud 3	26.362
	CRR073306	Third green 1	14.311
	CRR073307	Third green 2	13.493
	CRR073308	Third green 3	13.210
	CRR073309	Second white 1	14.331
	CRR073310	Second white 2	22.530
	CRR073311	Second white 3	16.187
	CRR073312	Silver flowering 1	16.634
	CRR073313	Silver flowering 2	11.128
	CRR073314	Silver flowering 3	12.149
	CRR073315	Gold flowering 1	15.048
	CRR073316	Gold flowering 2	10.957
	CRR073317	Gold flowering 3	8.191
	CRR073318	Tawny withering 1	26.781
	CRR073319	Tawny withering 2	25.755
	CRR073320	Tawny withering 3	18.499