Detail information of GWHGAAZE017828


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009773321.12.74007E-58PREDICTED: pectinesterase 1-like [Nicotiana sylvestris]
Swissprottr|Q43867|PME1_ARATH3E-28Pectinesterase 1 (Precursor)
trEMBLtr|M1BJI7|M1BJI7_SOLTU1E-53Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400046729}
TAIR10AT3G47670.14E-24Plant invertase/pectin methylesterase inhibitor superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1128233211289499+
GWHAAZE00000005mRNA1128233211289499+
GWHAAZE00000005exon1128233211282430+
GWHAAZE00000005exon1128901711289499+
GWHAAZE00000005CDS1128233211282430+
GWHAAZE00000005CDS1128901711289499+
Transcript Sequence

Network for GWHGAAZE017828

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0261


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04043.16PMEI331772.50E-26
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0004857molecular_functionenzyme inhibitor activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.217
SRR3591706second leaf7.189
SRR3591707mature leaf4.048
SRR3591708Shoot apex3.722
SRR3591709Stem11.781
SRR3591710White floral bud3.991
SRR3591711White flower3.884
SRR3591712Green floral bud4.137
SRR3591713Yellow flower0.625
SRP173429 SRR8316895Juvenile bud stage 3.189
SRR8316896Juvenile bud stage 2.597
SRR8316897Juvenile bud stage 0.937
SRR8316894Third green stage 0.930
SRR8316900Third green stage 2.546
SRR8316901Third green stage 3.075
SRR8316898Complete white stage 1.069
SRR8316899Complete white stage 7.523
SRR8316903Complete white stage 2.084
SRR8316902Silver flowering stage1.148
SRR8316904Silver flowering stage0.319
SRR8316905Silver flowering stage0.530
SRR8316906Gold flowering stage 0.789
SRR8316907Gold flowering stage 1.730
SRR8316908Gold flowering stage 1.113
SRP132670SRR6706286Control4.516
SRR6706287Light intensity 50%3.642
SRR6706288Light intensity 20%3.163
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.648
CNS0095593Slightly white alabastrum(diploid) 25.517
CNS0095594Slightly white alabastrum(diploid) 36.431
CNS0095595Whole white alabastrum(diploid) 23.874
CNS0095596Whole white alabastrum(diploid) 30.516
CNS0095597Whole white alabastrum(diploid) 42.965
CNS0095598Silvery flower (diploied) 111.714
CNS0095599Silvery flower (diploied) 26.767
CNS0095600Silvery flower (diploied) 32.768
CNS0095601Golden flower (diploid) 17.179
CNS0095602Golden flower (diploid) 26.077
CNS0095603Golden flower (diploid) 34.930
CNS0095604Slightly white alabastrum(tetraploid) 11.246
CNS0095605Slightly white alabastrum(tetraploid) 20.654
CNS0095606Slightly white alabastrum(tetraploid) 32.653
CNS0095607Whole white alabastrum(tetraploid) 11.397
CNS0095608Whole white alabastrum(tetraploid) 21.446
CNS0095609Whole white alabastrum(tetraploid) 31.793
CNS0095610Silvery flower (tetraploid) 11.016
CNS0095611Silvery flower (tetraploid) 20.792
CNS0095612Silvery flower (tetraploid) 30.864
CNS0095613Golden flower (tetraploid) 11.483
CNS0095614Golden flower (tetraploid) 21.019
CNS0095615Golden flower (tetraploid) 30.417
CRA001975CRR073297Stem 11.805
CRR073298Stem 23.754
CRR073299Stem 32.033
CRR073300Leaf 13.285
CRR073301Leaf 24.603
CRR073302Leaf 33.051
CRR073303Juvenile bud 13.654
CRR073304Juvenile bud 22.695
CRR073305Juvenile bud 37.489
CRR073306Third green 11.148
CRR073307Third green 21.381
CRR073308Third green 31.331
CRR073309Second white 10.288
CRR073310Second white 20.613
CRR073311Second white 30.187
CRR073312Silver flowering 10.429
CRR073313Silver flowering 20.698
CRR073314Silver flowering 30.129
CRR073315Gold flowering 112.212
CRR073316Gold flowering 218.238
CRR073317Gold flowering 312.213
CRR073318Tawny withering 114.646
CRR073319Tawny withering 225.286
CRR073320Tawny withering 314.141