Detail information of GWHGAAZE017829


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrACN40181.10unknown [Picea sitchensis]
Swissprottr|Q9ZRR5|TBA3_HORVU0Tubulin alpha-3 chain
trEMBLtr|F6H5R4|F6H5R4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47535.1}
TAIR10AT1G50010.10tubulin alpha-2 chain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1130675711310252-
GWHAAZE00000005mRNA1130675711310252-
GWHAAZE00000005exon1130675711307410-
GWHAAZE00000005exon1130797211308342-
GWHAAZE00000005exon1130982611310060-
GWHAAZE00000005exon1131016011310252-
GWHAAZE00000005CDS1131016011310252-
GWHAAZE00000005CDS1130982611310060-
GWHAAZE00000005CDS1130797211308342-
GWHAAZE00000005CDS1130675711307410-
Transcript Sequence

Network for GWHGAAZE017829

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00091.26Tubulin32136.90E-68
PF03953.18Tubulin_C2633925.70E-49
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07374TUBA Phagosome map04145
Apoptosismap04210
Tight junctionmap04530
Gap junctionmap04540

Gene Ontology

GO term OntologyName
GO:0007017biological_processmicrotubule-based process
GO:0005874cellular_componentmicrotubule
GO:0005200molecular_functionstructural constituent of cytoskeleton
GO:0005525molecular_functionGTP binding
GO:0003924molecular_functionGTPase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf204.460
SRR3591706second leaf51.592
SRR3591707mature leaf13.384
SRR3591708Shoot apex389.423
SRR3591709Stem66.694
SRR3591710White floral bud20.834
SRR3591711White flower14.611
SRR3591712Green floral bud36.916
SRR3591713Yellow flower3.218
SRP173429 SRR8316895Juvenile bud stage 68.493
SRR8316896Juvenile bud stage 78.679
SRR8316897Juvenile bud stage 37.330
SRR8316894Third green stage 25.667
SRR8316900Third green stage 41.458
SRR8316901Third green stage 43.432
SRR8316898Complete white stage 6.951
SRR8316899Complete white stage 28.494
SRR8316903Complete white stage 13.609
SRR8316902Silver flowering stage4.418
SRR8316904Silver flowering stage5.115
SRR8316905Silver flowering stage2.976
SRR8316906Gold flowering stage 8.787
SRR8316907Gold flowering stage 9.163
SRR8316908Gold flowering stage 8.082
SRP132670SRR6706286Control43.880
SRR6706287Light intensity 50%49.398
SRR6706288Light intensity 20%52.285
CNP0000432CNS0095592Slightly white alabastrum(diploid) 166.899
CNS0095593Slightly white alabastrum(diploid) 255.038
CNS0095594Slightly white alabastrum(diploid) 353.249
CNS0095595Whole white alabastrum(diploid) 245.043
CNS0095596Whole white alabastrum(diploid) 334.489
CNS0095597Whole white alabastrum(diploid) 436.955
CNS0095598Silvery flower (diploied) 138.321
CNS0095599Silvery flower (diploied) 241.502
CNS0095600Silvery flower (diploied) 327.712
CNS0095601Golden flower (diploid) 128.397
CNS0095602Golden flower (diploid) 225.910
CNS0095603Golden flower (diploid) 325.736
CNS0095604Slightly white alabastrum(tetraploid) 168.389
CNS0095605Slightly white alabastrum(tetraploid) 260.189
CNS0095606Slightly white alabastrum(tetraploid) 399.002
CNS0095607Whole white alabastrum(tetraploid) 145.418
CNS0095608Whole white alabastrum(tetraploid) 227.450
CNS0095609Whole white alabastrum(tetraploid) 347.750
CNS0095610Silvery flower (tetraploid) 111.632
CNS0095611Silvery flower (tetraploid) 214.236
CNS0095612Silvery flower (tetraploid) 314.482
CNS0095613Golden flower (tetraploid) 17.343
CNS0095614Golden flower (tetraploid) 210.004
CNS0095615Golden flower (tetraploid) 313.336
CRA001975CRR073297Stem 1118.860
CRR073298Stem 2109.421
CRR073299Stem 3194.605
CRR073300Leaf 158.254
CRR073301Leaf 252.131
CRR073302Leaf 358.267
CRR073303Juvenile bud 149.015
CRR073304Juvenile bud 231.682
CRR073305Juvenile bud 342.394
CRR073306Third green 119.637
CRR073307Third green 221.715
CRR073308Third green 318.470
CRR073309Second white 114.401
CRR073310Second white 210.208
CRR073311Second white 38.855
CRR073312Silver flowering 111.894
CRR073313Silver flowering 218.205
CRR073314Silver flowering 313.562
CRR073315Gold flowering 126.499
CRR073316Gold flowering 236.485
CRR073317Gold flowering 342.766
CRR073318Tawny withering 1275.210
CRR073319Tawny withering 2183.511
CRR073320Tawny withering 3327.420