Gene detail

Detail information of GWHGAAZE017834

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP12363.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9STT5\|AB7A_ARATH	ABC transporter A family member 7
trEMBL	tr\|A0A068UXK2\|A0A068UXK2_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_63 {ECO:0000313\|EMBL:CDP12363.1}
TAIR10	AT3G47780.1	ABC2 homolog 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	11377528	11384839	-
GWHAAZE00000005	mRNA	11377528	11384839	-
GWHAAZE00000005	exon	11377528	11377827	-
GWHAAZE00000005	exon	11378014	11378102	-
GWHAAZE00000005	exon	11378334	11378439	-
GWHAAZE00000005	exon	11378541	11378669	-
GWHAAZE00000005	exon	11379398	11379482	-
GWHAAZE00000005	exon	11379579	11379688	-
GWHAAZE00000005	exon	11379824	11380024	-
GWHAAZE00000005	exon	11380673	11381028	-
GWHAAZE00000005	exon	11381194	11381277	-
GWHAAZE00000005	exon	11381392	11381517	-
GWHAAZE00000005	exon	11381607	11381769	-
GWHAAZE00000005	exon	11381856	11382014	-
GWHAAZE00000005	exon	11382190	11382314	-
GWHAAZE00000005	exon	11382404	11382523	-
GWHAAZE00000005	exon	11382631	11382772	-
GWHAAZE00000005	exon	11382855	11382934	-
GWHAAZE00000005	exon	11383166	11383547	-
GWHAAZE00000005	exon	11384700	11384839	-
GWHAAZE00000005	five_prime_UTR	11384778	11384839	-
GWHAAZE00000005	CDS	11384700	11384777	-
GWHAAZE00000005	CDS	11383166	11383547	-
GWHAAZE00000005	CDS	11382855	11382934	-
GWHAAZE00000005	CDS	11382631	11382772	-
GWHAAZE00000005	CDS	11382404	11382523	-
GWHAAZE00000005	CDS	11382190	11382314	-
GWHAAZE00000005	CDS	11381856	11382014	-
GWHAAZE00000005	CDS	11381607	11381769	-
GWHAAZE00000005	CDS	11381392	11381517	-
GWHAAZE00000005	CDS	11381194	11381277	-
GWHAAZE00000005	CDS	11380673	11381028	-
GWHAAZE00000005	CDS	11379824	11380024	-
GWHAAZE00000005	CDS	11379579	11379688	-
GWHAAZE00000005	CDS	11379398	11379482	-
GWHAAZE00000005	CDS	11378541	11378669	-
GWHAAZE00000005	CDS	11378334	11378439	-
GWHAAZE00000005	CDS	11378014	11378102	-
GWHAAZE00000005	CDS	11377528	11377827	-

Transcript Sequence
>GWHTAAZE017854 TTTGGCGCTCATTTTCCTGTCAAAACTGGAATTTGTGTGAGAGAGACAGAGAACGTTTAGCAATGGTGGATCCATCGCGTGGTCCTTCAAGCTTCTGGACTCAGGCCAACGCTTTGCTCAGAAAGAATTTATCCTTCCAGAAACGGAATATCAGAACAAATATTCGGCTCGTCTTATTCCCAGTTTTACTCTGTTTGTTACTTGTTCTCATCCAAAATTTAGTCAACAATGAATTGAATAAAGCCTCAAATAAGTGTGGCTGCACTTGTATTGACACAGACGAGGATGGTCAATGTGAGGAAGTGTGTGGGATTGAGTACTCGACTTTAAGCCAAGCAAGAACATGTCGCATAGAAAACCCTCCAGAATGGCCTCCATTGTTACAAATACCAGCTCCAAGCTTCCGCGCTGTGAGAACTGATTTTGTTTCATATGGTGACTTGCCCGGTGATTCATGCAGGAGTACAGGGTCATGTCCCACAACTGTCCTTCTGACTGGGAATAATCTATCCCTCGGACAAAGTTTGGCTGGAAATATGTTTTCTAGTTTGTCCGCTCTGAATTCTTCTGATATATTGTCCAGTTTGGCCGGTGATATTTTGGGGTCCCAGTCAAATATTAGATCCGGCTTTCTTGACCCGGCTTTCTTTTCGAATCTGCCGGTCTATAGTATTCAACCTCGGTGCTCTCTAAACTCTACAATTTCTATTCCCTTGCATCTAGCATCCGTACAAGTGCATCAGGAGGTAAGATGCATTCAAGGTTTATATCTGTGGCGCAATAGTTCTTCTGATGTTAATGATGAGCTATATAAGGGTTACCGAAAAGGGAACTCAAAGGGGAAGGTTAATGAGATAACAGCAGCCTACGATTTTTTAAACTCGGACACAAATCATTACAATGTGAGCATATGGTACAACTCTACCTATAAGCATGACATCGGATTTGGTCCTCTTGCATTGATGCGGGTTCCTCGCTCAGTCAATCTGGTGTCAAATGCCTACCTCCAATTTCTGCTTGGGCCTGCTACAAAAATGTTATTTGAATTTGTCAAAGAAATGCCCAAGCCCGAAACAAAACGAACACTAGATTTCTCTTCTCTCCTTGGACCACTTTTTTTTACGTGGGTCATTCTACAACTATTCCCTGTTGTATTGACATCTTTGGTATACGAAAAGCAAGAGAATCTAAGAACAATGATGAAAATGCATGGGCTTGGCGATGGCCCTTACTGGATGATTTCTTATGCTTATTTTCTTGTTGTATCATTTGTCTATGTATTCTGTTTTGTCATGTTTGGCTCACTCATAGGGCTAAAGTTCTTCACACTGAATGATTACATCATCCAGTTTGTGTTTTATTTCATCTACATAAACTTGCAAGTTTCTCTGGCCTTTCTACTGGCTGCCTTTTTCTCTCGTGTGAAGATTGCTACGGTTGTAGGGTTCATAGTGGTCTTTGGAAGCGGCCTTTTGGGTGCCTTTCTTTTTCAGTTCTTTCTTCAAGATGTATCATTCCCAAGAGAATGGATTTTCATAATGGAGTTATATCCTGGCTTTTCTCTTTATCGTGGTTTATATGAGTTTGCACAATCTTCGCTAACGGGAAACTATATGGGAACCAAGGGGATGAGTTGGGGAGACTTAAAGGGTGGCACTAGTGGGATGAGAGATATCTTAATTATGATGTTAGCTCAATGGTTGGTGGTACTGTTTGTTGCGTATTACATTGATCAAGTTGTATTATCGGGAAGAAGCCCTCTAATTTTTTTGCAAAAATTCAGAAAGAAGTCTTCAGCGCCTTTACAGAGACCTAGTTTCCAAAGGCAGGGATCCAAAGTTTTTGTTGAGATGGATAAACCTGATGTTGTTCAAGAGAGAGAGAAGATTGAACAGTTACTGCTTGAATCAAGTACAAGTAATGCTATCATCTGCAATGACCTAAACAAGGTGTATCCAGGGAGGGATGGAAACTCTGAGAAATTTGCAGTGAGAGGATTATCACTGGCTTTGCCACAAGGAGAGTGCTTTGGTATGCTTGGTCCCAATGGTGCTGGCAAAACCTCTTTTATTAATATGATGATTGGGCTCGTAAAGCCGAGCAGTGGCACCGCTTATGTTCAGGGTCTCGATATACGTACTCAAATGAATGAAGTATACGCTAATATGGGTGTATGTCCCCAGCAAGACCTGCTCTGGGAAACGCTAACAGGAAGGGAACACCTGCTTTTCTATGGAAGGCTTAAGAACCTTAAAGGTGCCGCCTTAACCCAAGCAGTAGAAGAATCTCTCAAGAGTGTTAACCTATTTCATGGAGGGGTTGCTGATAAAAAAGCAGGGAAATACAGTGGAGGTATGAAGAGAAGGCTCAGTGTTGCCATTTCCTTGATTGGGGATCCCAAGGTTGTCTATATGGACGAGCCCAGTACTGGACTTGATCCAGTTTCAAGAAATTGTTTGTGGAATGTGGTGAAGCGGGCAAAGCAAGATCGGGCTATTATTCTCACGACACATTCAATGGAGGAGGCGGAGCATCTATGTGATCGAGTAGGAATTTTTGTCGATGGCAGCTTGCAGTGTATAGGAAATTCCAAAGAGTTGAAGGGTAGATATGGAGGCTCATACGTGTTTACAATGACAACATCATCAAGTCAGGATGAGGAAGTGGAGAAATTGGTGAGGAACCTCTCACCGAATGCTAAAAAAGTATACCAAATATCTGAGACCCAGAAGTTTGAACTACCGAAACAAGAGGTGAGAATTTCGGACATTTTTAAAGCTGTTGAGAATGCAAAGAGTAGGTTCACGGTCCATGCATGGGGTCTTGTTGACACAACTCTTGAAGATGTATTCATCAAGGTTACACATGGGGCTCAAGCATTCAACACTCTCACTTAA

Network for GWHGAAZE017834

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0278

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12698.8	ABC2_membrane_3	263	553	4.70E-14
PF00005.28	ABC_tran	644	788	3.20E-24

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.167
	SRR3591706	second leaf	0.782
	SRR3591707	mature leaf	1.729
	SRR3591708	Shoot apex	0.303
	SRR3591709	Stem	3.368
	SRR3591710	White floral bud	0.294
	SRR3591711	White flower	0.679
	SRR3591712	Green floral bud	0.216
	SRR3591713	Yellow flower	0.088
SRP173429	SRR8316895	Juvenile bud stage	0.206
	SRR8316896	Juvenile bud stage	0.208
	SRR8316897	Juvenile bud stage	0.074
	SRR8316894	Third green stage	0.046
	SRR8316900	Third green stage	0.110
	SRR8316901	Third green stage	0.198
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.185
	SRR8316903	Complete white stage	0.212
	SRR8316902	Silver flowering stage	0.006
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.143
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.046
SRP132670	SRR6706286	Control	0.213
	SRR6706287	Light intensity 50%	0.273
	SRR6706288	Light intensity 20%	0.244
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.314
	CNS0095593	Slightly white alabastrum(diploid) 2	0.145
	CNS0095594	Slightly white alabastrum(diploid) 3	0.291
	CNS0095595	Whole white alabastrum(diploid) 2	0.177
	CNS0095596	Whole white alabastrum(diploid) 3	0.157
	CNS0095597	Whole white alabastrum(diploid) 4	0.303
	CNS0095598	Silvery flower (diploied) 1	2.781
	CNS0095599	Silvery flower (diploied) 2	0.746
	CNS0095600	Silvery flower (diploied) 3	0.399
	CNS0095601	Golden flower (diploid) 1	0.212
	CNS0095602	Golden flower (diploid) 2	0.584
	CNS0095603	Golden flower (diploid) 3	0.491
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.658
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.248
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.857
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.336
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.111
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.108
	CNS0095610	Silvery flower (tetraploid) 1	0.053
	CNS0095611	Silvery flower (tetraploid) 2	1.035
	CNS0095612	Silvery flower (tetraploid) 3	0.083
	CNS0095613	Golden flower (tetraploid) 1	0.010
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.099
	CRR073298	Stem 2	0.019
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.008
	CRR073301	Leaf 2	0.012
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.001
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.003
	CRR073308	Third green 3	0.002
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.001
	CRR073312	Silver flowering 1	0.006
	CRR073313	Silver flowering 2	0.006
	CRR073314	Silver flowering 3	0.005
	CRR073315	Gold flowering 1	0.511
	CRR073316	Gold flowering 2	0.465
	CRR073317	Gold flowering 3	0.836
	CRR073318	Tawny withering 1	0.104
	CRR073319	Tawny withering 2	0.042
	CRR073320	Tawny withering 3	0.055