Detail information of GWHGAAZE017840


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009775703.11.2883E-174PREDICTED: nuclear ribonuclease Z-like [Nicotiana sylvestris]
Swissprottr|Q8LGU7|RNZN_ARATH1E-151Nuclear ribonuclease Z
trEMBLtr|K4BKG7|K4BKG7_SOLLC2E-172Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc03g113140.2.1}
TAIR10AT1G74700.11E-118tRNAse Z1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1149037711494525-
GWHAAZE00000005mRNA1149037711494525-
GWHAAZE00000005exon1149425611494525-
GWHAAZE00000005exon1149347711493639-
GWHAAZE00000005exon1149331611493386-
GWHAAZE00000005exon1149310211493197-
GWHAAZE00000005exon1149197011492083-
GWHAAZE00000005exon1149093611491004-
GWHAAZE00000005exon1149075411490828-
GWHAAZE00000005exon1149037711490646-
GWHAAZE00000005CDS1149425611494525-
GWHAAZE00000005CDS1149347711493639-
GWHAAZE00000005CDS1149331611493386-
GWHAAZE00000005CDS1149310211493197-
GWHAAZE00000005CDS1149197011492083-
GWHAAZE00000005CDS1149093611491004-
GWHAAZE00000005CDS1149075411490828-
GWHAAZE00000005CDS1149057211490646-
GWHAAZE00000005three_prime_UTR1149037711490571-
Transcript Sequence

Network for GWHGAAZE017840

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12706.8Lactamase_B_2782794.70E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00784rnz RNA transport map03013

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf12.923
SRR3591706second leaf7.440
SRR3591707mature leaf6.921
SRR3591708Shoot apex9.581
SRR3591709Stem10.762
SRR3591710White floral bud14.133
SRR3591711White flower10.067
SRR3591712Green floral bud10.872
SRR3591713Yellow flower13.576
SRP173429 SRR8316895Juvenile bud stage 8.288
SRR8316896Juvenile bud stage 10.318
SRR8316897Juvenile bud stage 5.368
SRR8316894Third green stage 4.700
SRR8316900Third green stage 13.592
SRR8316901Third green stage 13.517
SRR8316898Complete white stage 7.782
SRR8316899Complete white stage 24.832
SRR8316903Complete white stage 10.659
SRR8316902Silver flowering stage6.730
SRR8316904Silver flowering stage7.261
SRR8316905Silver flowering stage3.119
SRR8316906Gold flowering stage 12.268
SRR8316907Gold flowering stage 11.483
SRR8316908Gold flowering stage 11.241
SRP132670SRR6706286Control13.312
SRR6706287Light intensity 50%14.769
SRR6706288Light intensity 20%15.864
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.777
CNS0095593Slightly white alabastrum(diploid) 210.201
CNS0095594Slightly white alabastrum(diploid) 39.154
CNS0095595Whole white alabastrum(diploid) 28.425
CNS0095596Whole white alabastrum(diploid) 37.950
CNS0095597Whole white alabastrum(diploid) 48.180
CNS0095598Silvery flower (diploied) 110.339
CNS0095599Silvery flower (diploied) 25.513
CNS0095600Silvery flower (diploied) 38.675
CNS0095601Golden flower (diploid) 15.814
CNS0095602Golden flower (diploid) 27.738
CNS0095603Golden flower (diploid) 36.952
CNS0095604Slightly white alabastrum(tetraploid) 19.635
CNS0095605Slightly white alabastrum(tetraploid) 29.101
CNS0095606Slightly white alabastrum(tetraploid) 311.956
CNS0095607Whole white alabastrum(tetraploid) 14.865
CNS0095608Whole white alabastrum(tetraploid) 25.705
CNS0095609Whole white alabastrum(tetraploid) 38.897
CNS0095610Silvery flower (tetraploid) 111.228
CNS0095611Silvery flower (tetraploid) 212.360
CNS0095612Silvery flower (tetraploid) 312.050
CNS0095613Golden flower (tetraploid) 15.518
CNS0095614Golden flower (tetraploid) 29.110
CNS0095615Golden flower (tetraploid) 34.347
CRA001975CRR073297Stem 18.232
CRR073298Stem 28.261
CRR073299Stem 36.486
CRR073300Leaf 19.455
CRR073301Leaf 210.992
CRR073302Leaf 38.438
CRR073303Juvenile bud 17.854
CRR073304Juvenile bud 28.080
CRR073305Juvenile bud 37.893
CRR073306Third green 13.338
CRR073307Third green 23.305
CRR073308Third green 33.348
CRR073309Second white 13.793
CRR073310Second white 24.739
CRR073311Second white 34.296
CRR073312Silver flowering 12.232
CRR073313Silver flowering 21.412
CRR073314Silver flowering 33.902
CRR073315Gold flowering 16.098
CRR073316Gold flowering 24.549
CRR073317Gold flowering 30.933
CRR073318Tawny withering 17.618
CRR073319Tawny withering 29.038
CRR073320Tawny withering 310.916