Gene detail

Detail information of GWHGAAZE017845

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009614195.1	8.7106E-143	PREDICTED: probable polygalacturonase At3g15720 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9LW07\|PGLR3_ARATH	8E-97	Probable polygalacturonase At3g15720 (Precursor)
trEMBL	tr\|A0A068V2S0\|A0A068V2S0_COFCA	9E-138	Coffea canephora DH200=94 genomic scaffold, scaffold_92 {ECO:0000313\|EMBL:CDP14857.1}
TAIR10	AT3G15720.1	3E-74	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	11568387	11571472	-
GWHAAZE00000005	mRNA	11568387	11571472	-
GWHAAZE00000005	exon	11568387	11568584	-
GWHAAZE00000005	exon	11568881	11568997	-
GWHAAZE00000005	exon	11569160	11569268	-
GWHAAZE00000005	exon	11569388	11569469	-
GWHAAZE00000005	exon	11569578	11569785	-
GWHAAZE00000005	exon	11569935	11570141	-
GWHAAZE00000005	exon	11570435	11570521	-
GWHAAZE00000005	exon	11571374	11571472	-
GWHAAZE00000005	CDS	11571374	11571472	-
GWHAAZE00000005	CDS	11570435	11570521	-
GWHAAZE00000005	CDS	11569935	11570141	-
GWHAAZE00000005	CDS	11569578	11569785	-
GWHAAZE00000005	CDS	11569388	11569469	-
GWHAAZE00000005	CDS	11569160	11569268	-
GWHAAZE00000005	CDS	11568881	11568997	-
GWHAAZE00000005	CDS	11568387	11568584	-

Transcript Sequence
>GWHTAAZE017865 ATGTTTTCATCGGTGAGGGTATTGTCCCGTCCAGTTAGTTTTGTATTTGACGTCACACATTATGGTGCAACCGGAGATGGCTACTCTGACGATACTAGTGCGTTTGTGAAAGCATGGGAAGCAACATGCAAGTCATCATCTTCATCTTCTGCAGCGATGGTTGTTCCTTCGGGTATGACTTTTTTGCTTAATTACTATATATTAACTTATCTGTGTTTACAGATAAATGGAGATATAGTGGCACCACAAGATCCATCTTTGTGGAAATGTAAGGATAGCAACTGCAATAAATGGATCCATTTTAAAAGCGTTAATGGGCTTTCGGTTTATGGGTTTGGAAAAATCCACGGGCGGGGCGAGAAATGGTGGGATCAGCATGGCACGAAACCAACAGCTTTCCAGATATCAAACTCCAACAATGTTCAAATAAGCGGTTTGACCTTTAAGAACAATCCTCGTATGCATCTTGTCTTGTATCAAATAAGAACGCTCCAAGTCTCAAATATTACCATTGATGCGCCCGGAAACAGTCCAAACACAGATGGCATTCACATCTCAGGGTGCACTGATGTTTCCGTAGACCATTGCAATATCGCAACTGGTGATGATTGCATATCAATAGTAAGTGGATCTTCTAACATTAAGATCAGCAAGATTATCTGTGGACCAGGCCATGGTATAAGTATCGGAAGTTTAGGAAAACATGGAGCCAATGATAAAGTGGAGCACGTTCATGTTCGAGATTCTGTATTCAGAGGATCCAGCAATGGCGCTAGGATTAAGACGTGGCAGGGAGGTAGCGGTTACGCAAGGCATATAATCTTCGAACGTATATTGTCTCAAGGATCGCAAAATCCTATTATCATAGACCAGTTCTACTGTGATCATGAGGATTGCGGTGTGATACATGAATCAGCAGTGAAAGTTAGTAATGTGACATTCAGAGAGATAGTAGGAGCACCGAGGAAGGAGGCGGGCATAATAATAAATTGCAGTGCCACAATGGCATGCACAGACATAGTATTGGATAATATCGATCTTCGTTTAAAAGACGGGACTCAAGCTTCTTATCAAATCAATAACGCCTATGGAAGAATTCAAGGACAA

Network for GWHGAAZE017845

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	90	361	5.00E-77

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.007
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.539
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.546
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.141
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.542
	SRR8316901	Third green stage	0.219
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.052
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.265
	SRR6706287	Light intensity 50%	0.310
	SRR6706288	Light intensity 20%	0.174
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.066
	CNS0095593	Slightly white alabastrum(diploid) 2	0.184
	CNS0095594	Slightly white alabastrum(diploid) 3	0.362
	CNS0095595	Whole white alabastrum(diploid) 2	0.629
	CNS0095596	Whole white alabastrum(diploid) 3	0.967
	CNS0095597	Whole white alabastrum(diploid) 4	0.994
	CNS0095598	Silvery flower (diploied) 1	0.066
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.194
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.607
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.060
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.876
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.680
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.018
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.003
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.042
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.045
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.062
	CRR073304	Juvenile bud 2	0.135
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.003
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000