Gene detail

Detail information of GWHGAAZE017859

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002511502.1	4.1552E-106	LOB domain-containing protein, putative [Ricinus communis]
Swissprot	tr\|Q9STS6\|LBD27_ARATH	1E-51	LOB domain-containing protein 27
trEMBL	tr\|B9R927\|B9R927_RICCO	2E-106	LOB domain-containing protein, putative {ECO:0000313\|EMBL:EEF52104.1}
TAIR10	AT3G47870.1	2E-43	LOB domain-containing protein 27

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	11788515	11790003	+
GWHAAZE00000005	mRNA	11788515	11790003	+
GWHAAZE00000005	exon	11788515	11789269	+
GWHAAZE00000005	exon	11789584	11790003	+
GWHAAZE00000005	CDS	11788515	11789269	+
GWHAAZE00000005	CDS	11789584	11789647	+
GWHAAZE00000005	three_prime_UTR	11789648	11790003	+

Transcript Sequence
>GWHTAAZE017879 ATGACCCTCAAGGGTGGCACCAGCCAAGCTTGCGCTGCGTGCAAGTACCAAAGGAGAAAGTGCACTCCTGACTGTGCACTCGCCCCTTACTTCCCTCCTGACCAACCCAAAATGTTCCAAAACGCCCACAAATTATTCGGCGTTAGCAACATTTTGAAAATCCTCAAACAACTCGACCCTCCCCAAAAAATGATCGCTATGCAGTCCATCATTTACCAATCCAACATACGCGATCGCTTTCCCGTTCATGGTTGTCTAGGCATTATCTGCCAACTCCGCTACCAAATCCACCAGGCTGAGGAAGAATTACATGCGGTTCACACCCAACTCGCCCTCTATCGCCACCATGATATTGCCTCCATCCCTAATGACACAAATGCGCAATTGACCAATGTCGCCCAATCCAATAACAATGCGCTCAATCTCTTTCAAGAAACTACCACTTACAACCCTGTGCCGGCTTTGCCCATTAATTCGCACCACTCTTATGCCAATAGTGGCTACGTTGAATCTAAGGATAATAATTTAATCAATTCTATGTGGGTCCAACCACAACAAGCGTATTATGACCGGGATGATGATAATAATAATAATAATGATAACACGATGGCAATACAATCTCAGTTGATTTCGTCAACACAACAACTGACACTACAAGATGAGATGGTGCAGGAGTACGAGGAGATTCATCCGTTCTTTGACACTATAGATGACAGACAGTCGTATATTGAATCGAAGGAGGCGTATGAGTCAAGCTCGGAATCATCCCTCAAAGATACTTCCCAGTCCCTTGAGCTAACATTGCTGAGAGCAAATTGAAGAGTTCTATTTTCATAGTTTTATTTAAAGTGATAAAACCTGGAGAAGAATAACAGGGTGGCTTTGACCTTTCTGTGCGATGATTCTCTCTTTTTCGATTTTTTTCTTTCTTTCCACATTTGCTTTCATAGATAGTTCCACAATTTTGATGCCCTTTTCCGTTTGGTTTCATTCCATTATTAGTATTTTCTTCTCCCTTTTTTAGTACTCGGAGAAATTAGTTAACGGGTTTCATAATAGATAAGCTATCCGGCCTTTGTAAATTAATTAAGTTTTGCATAAAAAATACATGCAATGAAAGTGTGAGAAATTTTTGCTGATTTTAGTTTAATGAATATGTTTTAGTTTTCTAACCA

Network for GWHGAAZE017859

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03195.15	LOB	10	107	6.00E-37

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	LOB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.088
	SRR3591710	White floral bud	2.426
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	38.820
	SRR3591713	Yellow flower	0.100
SRP173429	SRR8316895	Juvenile bud stage	29.622
	SRR8316896	Juvenile bud stage	56.971
	SRR8316897	Juvenile bud stage	18.929
	SRR8316894	Third green stage	12.097
	SRR8316900	Third green stage	32.954
	SRR8316901	Third green stage	36.019
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.177
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.031
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.029
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	12.572
	SRR6706287	Light intensity 50%	9.844
	SRR6706288	Light intensity 20%	6.877
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	49.033
	CNS0095593	Slightly white alabastrum(diploid) 2	34.676
	CNS0095594	Slightly white alabastrum(diploid) 3	63.100
	CNS0095595	Whole white alabastrum(diploid) 2	63.112
	CNS0095596	Whole white alabastrum(diploid) 3	75.090
	CNS0095597	Whole white alabastrum(diploid) 4	68.920
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.173
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.152
	CNS0095602	Golden flower (diploid) 2	0.190
	CNS0095603	Golden flower (diploid) 3	0.021
	CNS0095604	Slightly white alabastrum(tetraploid) 1	68.901
	CNS0095605	Slightly white alabastrum(tetraploid) 2	76.938
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	88.006
	CNS0095608	Whole white alabastrum(tetraploid) 2	78.393
	CNS0095609	Whole white alabastrum(tetraploid) 3	42.132
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.279
	CNS0095612	Silvery flower (tetraploid) 3	0.544
	CNS0095613	Golden flower (tetraploid) 1	0.343
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.088
CRA001975	CRR073297	Stem 1	20.916
	CRR073298	Stem 2	18.043
	CRR073299	Stem 3	8.940
	CRR073300	Leaf 1	20.037
	CRR073301	Leaf 2	18.533
	CRR073302	Leaf 3	12.372
	CRR073303	Juvenile bud 1	5.869
	CRR073304	Juvenile bud 2	2.397
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.194
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.241
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.098
	CRR073312	Silver flowering 1	0.814
	CRR073313	Silver flowering 2	0.489
	CRR073314	Silver flowering 3	0.279
	CRR073315	Gold flowering 1	0.358
	CRR073316	Gold flowering 2	0.045
	CRR073317	Gold flowering 3	0.239
	CRR073318	Tawny withering 1	0.510
	CRR073319	Tawny withering 2	0.336
	CRR073320	Tawny withering 3	0.235