Gene detail

Detail information of GWHGAAZE017861

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011087196.1	0	PREDICTED: uncharacterized protein LOC105168751 [Sesamum indicum]
trEMBL	tr\|F6GTB9\|F6GTB9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43128.1}
TAIR10	AT1G74780.1	3E-156	Nodulin-like / Major Facilitator Superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	11799472	11801310	+
GWHAAZE00000005	mRNA	11799472	11801310	+
GWHAAZE00000005	exon	11799472	11799933	+
GWHAAZE00000005	exon	11800144	11801310	+
GWHAAZE00000005	CDS	11799472	11799933	+
GWHAAZE00000005	CDS	11800144	11801310	+

Transcript Sequence
>GWHTAAZE017881 ATGGAGAGCATAATAATCAACATCAACAACAAATGGACAACTACAGTGGCAAGCATATGGATACAGTGCACCAGCGGCTCCCTCTACACCTTCAGCATCTACTCTTCCGCCCTCAAATCCACCCAATCCTACGATCAGTCAACCCTCGACACCCTCTCCGTCTTCAAAGACTTCGGCGCTAACTCCGGCCTCCTCTCCGGCCTCCTCTACTCCTCCGTAGCATCATATTCCGCCGGTGCTCGTCCATGGGCGGTGCTGGCTGCCGGTGCTATCCAGAGCTTCGCTGGCTACTTTCTCATGTGGCTGTCGGTGGCCGGAGCGATTCCGCGTCCGCCTTTTCCGGTTATGTGCCTCTTCATGCTTGTAGCGGCTCACGGTCAGACTTTCTTCAATACTGCTAATGTCGTCACTGCTGTTCATAATTTTCCCAATTATAGTGGGACCATTGTTGGCATCATGAAGGGTTTTCTAGGCTTGAGTGGAGCAATATTAATTCAAGCTTATCAGGCAATATTCGAGAACAGACCCACCTCTTATCTTTTGATGTTGGCTCTATTACCTACTTTTAACTCTCTGTTTTTCATGTGTTTTGTGAGGATCTTTAACACGAATAAAGTAAATGAGAAGAAGCACCTCAATTGGTTTTCACTGGCTGCTATCGTTATTGCCGCTTATCTCATGGTCGTGATAATATTAGAGAACACTGTTACATTAAAATTGCCAGTACGCATCTCCGTATTTGCTTTCCTTGTTATATTGTTGGCATCACCTCTTTACATTGCAATTAAAGCCCACCATAACGAACCACTTAGGACTTCCTTTATTGAGGAGAACCAAGTCATTGATGATTCAGACGAGGTTGATACAGGGATTTTACATGCTGCAGAAGATTCCAGAGGGTACCGTCGGTTGCCTGCTGATGTGGACCATGATTCCTCACAATTGGGAGAAAATATGAATCTATTGCAGGCCATTTGCATTGGTGACTTTTGGTTTTTGTTTATTGCAACGGCTTGTTGTATGGGATCGGGGCTTGCCACCGTGAATAATATCAGCCAAATAGGAGGATCACTTGGGTACACAAACTTCGAGACAAGTACGTTGGTTTCTTTATGGAGCATTTGGAATTTCCTTGGACGTTTTGGGGCTGGCTATGTATCGGATTACTTCTTGCACGTTAAAAGCTGGGCCCGGCCATTGTTCATGGCCTTCACTCTAGCAACTATGAGCATTGGTCATTCAGTGATTGCTTCAGGTTTGCCTGGTTCTTTATACGCTGGTTCTGTTTTGGTGGGTGTTTGTTACGGTTCACAGTGGTCCTTAATGCCCACGATTGCTTCTGAGATATTTGGTGTAGCACATTTTGGAACAATATTCAACACCATTACCATCGCAAGTCCTATTGGATCTTATATGTTCTCTGTGAGGGTGGTTGGGTATATTTATGACAAAGAAGCGGCTGGGAAAGGAAACACCTGCAGTGGAGCTCGATGCTTCATGTTATCGTTTTTTATTATGGCGGGTGCTACTTTTGTGGGGTTTCTTGTTGCTTTGGCTTTATTCTTTCGGACAAGGACCTTCTATCAAGGGACTGTTGTTAGAAGATTACAAGTGTCTGTCATGAAGTGA

Network for GWHGAAZE017861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0220

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06813.14	Nodulin-like	11	262	1.40E-68
PF07690.17	MFS_1	333	525	8.10E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0005887	cellular_component	integral component of plasma membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.326
	SRR3591706	second leaf	6.406
	SRR3591707	mature leaf	8.451
	SRR3591708	Shoot apex	12.923
	SRR3591709	Stem	9.855
	SRR3591710	White floral bud	7.509
	SRR3591711	White flower	11.495
	SRR3591712	Green floral bud	18.156
	SRR3591713	Yellow flower	14.823
SRP173429	SRR8316895	Juvenile bud stage	17.779
	SRR8316896	Juvenile bud stage	25.381
	SRR8316897	Juvenile bud stage	32.715
	SRR8316894	Third green stage	11.534
	SRR8316900	Third green stage	29.440
	SRR8316901	Third green stage	30.236
	SRR8316898	Complete white stage	7.838
	SRR8316899	Complete white stage	34.545
	SRR8316903	Complete white stage	14.189
	SRR8316902	Silver flowering stage	9.687
	SRR8316904	Silver flowering stage	15.351
	SRR8316905	Silver flowering stage	5.760
	SRR8316906	Gold flowering stage	17.544
	SRR8316907	Gold flowering stage	15.353
	SRR8316908	Gold flowering stage	9.636
SRP132670	SRR6706286	Control	24.942
	SRR6706287	Light intensity 50%	25.657
	SRR6706288	Light intensity 20%	25.693
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	22.850
	CNS0095593	Slightly white alabastrum(diploid) 2	25.849
	CNS0095594	Slightly white alabastrum(diploid) 3	21.708
	CNS0095595	Whole white alabastrum(diploid) 2	29.444
	CNS0095596	Whole white alabastrum(diploid) 3	24.538
	CNS0095597	Whole white alabastrum(diploid) 4	27.263
	CNS0095598	Silvery flower (diploied) 1	28.209
	CNS0095599	Silvery flower (diploied) 2	21.387
	CNS0095600	Silvery flower (diploied) 3	20.319
	CNS0095601	Golden flower (diploid) 1	22.207
	CNS0095602	Golden flower (diploid) 2	22.026
	CNS0095603	Golden flower (diploid) 3	23.557
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.427
	CNS0095605	Slightly white alabastrum(tetraploid) 2	33.318
	CNS0095606	Slightly white alabastrum(tetraploid) 3	54.825
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.378
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.545
	CNS0095609	Whole white alabastrum(tetraploid) 3	45.613
	CNS0095610	Silvery flower (tetraploid) 1	34.573
	CNS0095611	Silvery flower (tetraploid) 2	30.846
	CNS0095612	Silvery flower (tetraploid) 3	21.847
	CNS0095613	Golden flower (tetraploid) 1	17.235
	CNS0095614	Golden flower (tetraploid) 2	28.514
	CNS0095615	Golden flower (tetraploid) 3	12.244
CRA001975	CRR073297	Stem 1	29.389
	CRR073298	Stem 2	27.583
	CRR073299	Stem 3	15.146
	CRR073300	Leaf 1	32.773
	CRR073301	Leaf 2	27.555
	CRR073302	Leaf 3	17.372
	CRR073303	Juvenile bud 1	17.831
	CRR073304	Juvenile bud 2	8.335
	CRR073305	Juvenile bud 3	17.812
	CRR073306	Third green 1	1.780
	CRR073307	Third green 2	2.599
	CRR073308	Third green 3	1.804
	CRR073309	Second white 1	3.390
	CRR073310	Second white 2	2.002
	CRR073311	Second white 3	3.490
	CRR073312	Silver flowering 1	1.311
	CRR073313	Silver flowering 2	1.225
	CRR073314	Silver flowering 3	3.731
	CRR073315	Gold flowering 1	4.951
	CRR073316	Gold flowering 2	10.071
	CRR073317	Gold flowering 3	4.271
	CRR073318	Tawny withering 1	12.474
	CRR073319	Tawny withering 2	13.628
	CRR073320	Tawny withering 3	10.245