Gene detail

Detail information of GWHGAAZE017875

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009781378.1	1.29042E-78	PREDICTED: uncharacterized protein LOC104230311 isoform X2 [Nicotiana sylvestris]
trEMBL	tr\|A0A068V336\|A0A068V336_COFCA	1E-77	Coffea canephora DH200=94 genomic scaffold, scaffold_92 {ECO:0000313\|EMBL:CDP14924.1}
TAIR10	AT3G48070.1	6E-45	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12007387	12008208	+
GWHAAZE00000005	mRNA	12007387	12008208	+
GWHAAZE00000005	exon	12007387	12007921	+
GWHAAZE00000005	exon	12007952	12008208	+
GWHAAZE00000005	CDS	12007387	12007921	+
GWHAAZE00000005	CDS	12007952	12008208	+

Transcript Sequence
>GWHTAAZE017895 ATGCACAAAAGCAACAATAGCGAAAGGGAAAGGGAAAGGGATCCATCTATAGAGAAATTGGAGATTAATCCGGGGAGGGAAGAGAGCAATGGATCGAGGCATCGTCAGTTCAGTGATTCGGAATCTCTGTTGAACAGTCCCACCAGTCAAATAAGTAGTAATGAGTGTGGAAATAATTTCACCGGGAGTAGCAGTAGCAGTAGTAGTAGCAGCAGCAGTGGTGGATGTTGTTCAGGGAGCATTACTGAAGAAGATGATGATGGTTGTTTGGATGATTGGGAGGCAATTGCTGATGCTTTGGCTGCCACCGATGACAAGGAGGAAGAACAAAACCCTAACCCTAATTTGGATTATCTGAATGAACATGAAAATGTCTCCCAATTGGTTTCTTCACCCGAATTGACTAAGGACAAATTGAAGCCCAAGGTTTATGTCAACAGCAAGGCATGGAGACCAGATGATGCTTTTCGTCCTCAGAGTTTGCCTAATTTAGTAAAGCACCGTAGCTTCCCTATGAATTCGGAGCGGCATTATGATGTTAAATCGACTCCGTCTTCATGTCCTATTTGCTTCGAGGATCTGGATTTGACTGATTCAAGTTTTCTTCCTTGTCCGTGTGGGTTTAGGCTCTGCCTGTTCTGCCACAAGAGGATTCTTGAGCAGGATGCACGTTGCCCTGGCTGTAGGAAGCAGTACGAGTATCGAGCTGCGGTTGAGGGAGAAGCGACTCTCGATGGAGGCAATATGACATTTCGAATGGCTCGTTCTTGCAGCATGATATCAAGGTCTTAG

Network for GWHGAAZE017875

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14570.7	zf-RING_4	187	233	1.50E-18

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.116
	SRR3591706	second leaf	15.546
	SRR3591707	mature leaf	21.652
	SRR3591708	Shoot apex	23.288
	SRR3591709	Stem	18.685
	SRR3591710	White floral bud	36.649
	SRR3591711	White flower	40.443
	SRR3591712	Green floral bud	28.605
	SRR3591713	Yellow flower	27.126
SRP173429	SRR8316895	Juvenile bud stage	12.004
	SRR8316896	Juvenile bud stage	22.623
	SRR8316897	Juvenile bud stage	8.504
	SRR8316894	Third green stage	7.852
	SRR8316900	Third green stage	26.369
	SRR8316901	Third green stage	24.149
	SRR8316898	Complete white stage	18.596
	SRR8316899	Complete white stage	36.109
	SRR8316903	Complete white stage	27.086
	SRR8316902	Silver flowering stage	15.603
	SRR8316904	Silver flowering stage	22.735
	SRR8316905	Silver flowering stage	11.312
	SRR8316906	Gold flowering stage	34.482
	SRR8316907	Gold flowering stage	32.007
	SRR8316908	Gold flowering stage	23.792
SRP132670	SRR6706286	Control	21.994
	SRR6706287	Light intensity 50%	24.328
	SRR6706288	Light intensity 20%	23.901
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.510
	CNS0095593	Slightly white alabastrum(diploid) 2	13.939
	CNS0095594	Slightly white alabastrum(diploid) 3	21.366
	CNS0095595	Whole white alabastrum(diploid) 2	17.773
	CNS0095596	Whole white alabastrum(diploid) 3	18.210
	CNS0095597	Whole white alabastrum(diploid) 4	16.622
	CNS0095598	Silvery flower (diploied) 1	28.047
	CNS0095599	Silvery flower (diploied) 2	29.109
	CNS0095600	Silvery flower (diploied) 3	40.200
	CNS0095601	Golden flower (diploid) 1	25.387
	CNS0095602	Golden flower (diploid) 2	34.482
	CNS0095603	Golden flower (diploid) 3	31.906
	CNS0095604	Slightly white alabastrum(tetraploid) 1	13.974
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.174
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.946
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.867
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.902
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.364
	CNS0095610	Silvery flower (tetraploid) 1	25.366
	CNS0095611	Silvery flower (tetraploid) 2	34.655
	CNS0095612	Silvery flower (tetraploid) 3	35.910
	CNS0095613	Golden flower (tetraploid) 1	22.384
	CNS0095614	Golden flower (tetraploid) 2	26.621
	CNS0095615	Golden flower (tetraploid) 3	26.496
CRA001975	CRR073297	Stem 1	24.565
	CRR073298	Stem 2	25.513
	CRR073299	Stem 3	25.732
	CRR073300	Leaf 1	22.915
	CRR073301	Leaf 2	27.827
	CRR073302	Leaf 3	21.324
	CRR073303	Juvenile bud 1	30.753
	CRR073304	Juvenile bud 2	27.182
	CRR073305	Juvenile bud 3	29.855
	CRR073306	Third green 1	13.458
	CRR073307	Third green 2	12.236
	CRR073308	Third green 3	13.405
	CRR073309	Second white 1	17.808
	CRR073310	Second white 2	11.084
	CRR073311	Second white 3	13.030
	CRR073312	Silver flowering 1	11.588
	CRR073313	Silver flowering 2	13.067
	CRR073314	Silver flowering 3	11.422
	CRR073315	Gold flowering 1	27.152
	CRR073316	Gold flowering 2	35.032
	CRR073317	Gold flowering 3	33.336
	CRR073318	Tawny withering 1	21.485
	CRR073319	Tawny withering 2	17.978
	CRR073320	Tawny withering 3	19.888