Gene detail

Detail information of GWHGAAZE017880

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009607525.1	5.2574E-107	PREDICTED: E2F transcription factor-like E2FE [Nicotiana tomentosiformis]
Swissprot	tr\|Q8LSZ4\|E2FE_ARATH	3E-69	E2F transcription factor-like E2FE
trEMBL	tr\|M1C9N4\|M1C9N4_SOLTU	2E-104	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400062861}
TAIR10	AT3G48160.1	6E-60	DP-E2F-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12037820	12039942	+
GWHAAZE00000005	mRNA	12037820	12039942	+
GWHAAZE00000005	exon	12037820	12037893	+
GWHAAZE00000005	exon	12037991	12038027	+
GWHAAZE00000005	exon	12038336	12038413	+
GWHAAZE00000005	exon	12038513	12038566	+
GWHAAZE00000005	exon	12038711	12038816	+
GWHAAZE00000005	exon	12038913	12038980	+
GWHAAZE00000005	exon	12039110	12039182	+
GWHAAZE00000005	exon	12039285	12039346	+
GWHAAZE00000005	exon	12039502	12039942	+
GWHAAZE00000005	CDS	12037820	12037893	+
GWHAAZE00000005	CDS	12037991	12038027	+
GWHAAZE00000005	CDS	12038336	12038413	+
GWHAAZE00000005	CDS	12038513	12038566	+
GWHAAZE00000005	CDS	12038711	12038816	+
GWHAAZE00000005	CDS	12038913	12038980	+
GWHAAZE00000005	CDS	12039110	12039182	+
GWHAAZE00000005	CDS	12039285	12039346	+
GWHAAZE00000005	CDS	12039502	12039942	+

Transcript Sequence
>GWHTAAZE017900 ATGGCGCTACTCTCAAAAGAATCTGGATCCACCTACTGCCGTAAACAGAAATCCCTCGGTCTCTTATGCTCCAATTTCTTGAGCCTGTATAATCATGATTACGTGGAAACGGTTCTCACAAAGAAGGCGAAGAATCTATATTCTTGGAAAGGGTTTGGAGCAGTCCCTGGGGCTTTACAGGAGCTCAAGAAAGGGGGTTTGACCGAGAATTACCATGTATTTGACGGCAATAGCCGTGCCAAGGTGTCGGATGAGGATGAAGATGAACAACTTACAAGTCCCAATAAAGCTCAGAATGGCAAATTGAACCCAAGTATTGGTCTGAAATTTTCTGCATCGTCAAAAAATGATAATCGGAAGGAAAAATCTTTGGGGCTTCTGACACAGAGTTTCATCAAGCTCTTCCTTTGCTCAAATATGGATATGATCTCCCTTGATGAAGCTGCAAAGATTCTGCTTGGAGAAGCTCGGAATGCAGCTCTGATGAGAACTAAAGTCAGGCGGCTATATGATATTGCAAATGTGTTGTCCTCTATGAATTTCATAGAGAAGATCAATCACCCAGAAACAAGGAAGCATGCTTTCAGGTGGTTGGGGATGGGACAAAAATTACAAAGTGGTTCCTATATTGAGACCAGGAAGAGAACTTTTGGGACTGAACTAAATACCAGTTTTAAGAGAAGCAAAGTGGCTTCACCAGCTGATGTGAACAGAGAACAGCTTATGGAAACACAGTTGCAAAGACAAATTAAATGTGAAAATTATAATAATGAAGTTGATAAGAGCAATTTGGAACAGGGTTTAAGATATGATTTGAAGAATAACGAGTTTGGTCCTTTCGCTCCTGTCAATGTGTCAGTGTCAGAATTTGGCTATTATGACGGTAAAAAGGAGTCCCAAGTTTGTGATTGGGAAAGTTTAACCTCTAACCATCGTCCTCAGTATCAGAATCAAGGTATGATTTATGCTTCAGAATCAAATTTAACTTTATAA

Network for GWHGAAZE017880

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02319.21	E2F_TDP	120	199	3.00E-20

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	E2F-DP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0005667	cellular_component	transcription regulator complex
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.664
	SRR3591706	second leaf	0.487
	SRR3591707	mature leaf	0.286
	SRR3591708	Shoot apex	6.937
	SRR3591709	Stem	2.103
	SRR3591710	White floral bud	0.078
	SRR3591711	White flower	0.264
	SRR3591712	Green floral bud	0.076
	SRR3591713	Yellow flower	0.180
SRP173429	SRR8316895	Juvenile bud stage	1.145
	SRR8316896	Juvenile bud stage	0.686
	SRR8316897	Juvenile bud stage	1.091
	SRR8316894	Third green stage	0.349
	SRR8316900	Third green stage	0.330
	SRR8316901	Third green stage	0.503
	SRR8316898	Complete white stage	0.036
	SRR8316899	Complete white stage	0.342
	SRR8316903	Complete white stage	0.168
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.032
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.090
	SRR8316908	Gold flowering stage	0.324
SRP132670	SRR6706286	Control	0.050
	SRR6706287	Light intensity 50%	0.293
	SRR6706288	Light intensity 20%	0.293
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.553
	CNS0095593	Slightly white alabastrum(diploid) 2	0.296
	CNS0095594	Slightly white alabastrum(diploid) 3	0.949
	CNS0095595	Whole white alabastrum(diploid) 2	0.598
	CNS0095596	Whole white alabastrum(diploid) 3	0.092
	CNS0095597	Whole white alabastrum(diploid) 4	0.398
	CNS0095598	Silvery flower (diploied) 1	0.805
	CNS0095599	Silvery flower (diploied) 2	1.549
	CNS0095600	Silvery flower (diploied) 3	0.022
	CNS0095601	Golden flower (diploid) 1	0.118
	CNS0095602	Golden flower (diploid) 2	0.102
	CNS0095603	Golden flower (diploid) 3	0.173
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.873
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.882
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.193
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.060
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.551
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.551
	CNS0095610	Silvery flower (tetraploid) 1	0.089
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.445
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.954
	CRR073298	Stem 2	1.001
	CRR073299	Stem 3	0.946
	CRR073300	Leaf 1	0.149
	CRR073301	Leaf 2	0.247
	CRR073302	Leaf 3	0.015
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.097
	CRR073307	Third green 2	0.051
	CRR073308	Third green 3	0.049
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.020
	CRR073316	Gold flowering 2	0.248
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.349
	CRR073319	Tawny withering 2	2.723
	CRR073320	Tawny withering 3	1.212