Detail information of GWHGAAZE017882


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002321562.25.25877E-82hypothetical protein POPTR_0015s08220g [Populus trichocarpa]
trEMBLtr|B9IEL7|B9IEL7_POPTR2E-82Uncharacterized protein {ECO:0000313|EMBL:EEF05689.2}
TAIR10AT5G50120.17E-49Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1207117512071855+
GWHAAZE00000005mRNA1207117512071855+
GWHAAZE00000005exon1207117512071855+
GWHAAZE00000005CDS1207117512071855+
Transcript Sequence

Network for GWHGAAZE017882

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0115


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD401782080.24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.714
SRR3591706second leaf0.336
SRR3591707mature leaf0.364
SRR3591708Shoot apex0.747
SRR3591709Stem1.131
SRR3591710White floral bud11.114
SRR3591711White flower5.806
SRR3591712Green floral bud2.963
SRR3591713Yellow flower1.033
SRP173429 SRR8316895Juvenile bud stage 2.836
SRR8316896Juvenile bud stage 2.095
SRR8316897Juvenile bud stage 0.788
SRR8316894Third green stage 1.666
SRR8316900Third green stage 3.715
SRR8316901Third green stage 3.123
SRR8316898Complete white stage 2.612
SRR8316899Complete white stage 15.511
SRR8316903Complete white stage 6.597
SRR8316902Silver flowering stage1.943
SRR8316904Silver flowering stage0.411
SRR8316905Silver flowering stage0.511
SRR8316906Gold flowering stage 1.159
SRR8316907Gold flowering stage 0.322
SRR8316908Gold flowering stage 0.256
SRP132670SRR6706286Control6.695
SRR6706287Light intensity 50%7.044
SRR6706288Light intensity 20%7.618
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.145
CNS0095593Slightly white alabastrum(diploid) 24.763
CNS0095594Slightly white alabastrum(diploid) 32.120
CNS0095595Whole white alabastrum(diploid) 25.277
CNS0095596Whole white alabastrum(diploid) 31.248
CNS0095597Whole white alabastrum(diploid) 43.368
CNS0095598Silvery flower (diploied) 15.179
CNS0095599Silvery flower (diploied) 25.800
CNS0095600Silvery flower (diploied) 34.280
CNS0095601Golden flower (diploid) 13.306
CNS0095602Golden flower (diploid) 22.915
CNS0095603Golden flower (diploid) 33.736
CNS0095604Slightly white alabastrum(tetraploid) 14.443
CNS0095605Slightly white alabastrum(tetraploid) 26.097
CNS0095606Slightly white alabastrum(tetraploid) 313.095
CNS0095607Whole white alabastrum(tetraploid) 14.329
CNS0095608Whole white alabastrum(tetraploid) 22.838
CNS0095609Whole white alabastrum(tetraploid) 31.476
CNS0095610Silvery flower (tetraploid) 12.598
CNS0095611Silvery flower (tetraploid) 25.473
CNS0095612Silvery flower (tetraploid) 32.841
CNS0095613Golden flower (tetraploid) 10.198
CNS0095614Golden flower (tetraploid) 20.913
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 17.912
CRR073298Stem 26.879
CRR073299Stem 35.847
CRR073300Leaf 15.868
CRR073301Leaf 29.086
CRR073302Leaf 35.145
CRR073303Juvenile bud 17.773
CRR073304Juvenile bud 22.970
CRR073305Juvenile bud 313.646
CRR073306Third green 10.641
CRR073307Third green 20.292
CRR073308Third green 30.848
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.129
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.658
CRR073316Gold flowering 20.890
CRR073317Gold flowering 30.260
CRR073318Tawny withering 10.429
CRR073319Tawny withering 22.351
CRR073320Tawny withering 30.000