Gene detail

Detail information of GWHGAAZE017896

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007036159.1	1.2776E-130	RING/U-box superfamily protein [Theobroma cacao]
Swissprot	tr\|Q9FL07\|ATL46_ARATH	4E-107	RING-H2 finger protein ATL46
trEMBL	tr\|A0A061FTJ6\|A0A061FTJ6_THECC	5E-131	RING/U-box superfamily protein {ECO:0000313\|EMBL:EOY20660.1}
TAIR10	AT5G40250.1	1E-71	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12245357	12246469	+
GWHAAZE00000005	mRNA	12245357	12246469	+
GWHAAZE00000005	exon	12245357	12246230	+
GWHAAZE00000005	exon	12246282	12246469	+
GWHAAZE00000005	CDS	12245357	12246230	+
GWHAAZE00000005	CDS	12246282	12246469	+

Transcript Sequence
>GWHTAAZE017916 ATGCCTAGAATTGCTAACCAACTTGTGCAAATTAATGACTTTCTACTCCACTCAGCCCCTCTCTCTGGTATCTCTTCAGCTTCCCATCATTTCTCACTTTCTGTGAAAGAATCAACCCCATCATCATCACCGTCACCATCACCATATGTGAGCAGAATCAGTCCGGCTGTTCTTTTGCTTATAGTAATTCTGGCTGTGATCTTTTTCATATCTGGACTACTTCATCTTCTTGTTAGATTTCTCATAAAAAGGCCATCTTTTTCGTCAATCTCCCAATCCAATAGATACCTAGAATCCTCTGGGTCTCAAGCTCTTCAAAGGCAACTGCAACAGCTCTTTCGCCTACACGACTCCGGTCTAGACCAAGCTCTAATTGATGCTCTACCTGTATTTTACTACAATGAAATTATGGGTTTGAAGGATCAATTCGATTGTGCTGTTTGTTTGTGCGAATTTTCAGTCCAAGACAAGCTTAGGTTGCTTCCTAATTGCAGTCATGCTTTTCACATCAATTGTATAGATACATGGCTTTTGTCAAACTCAACATGCCCACTTTGTAGGGGTAACCTTAACAACTCTGCCCTTCCCATGGAGAACCCATTGTTCTATTTTAACGACTCGAGGGAACAATTGAATGGGTTTTCTAGTGATATAGAGAATGAGTTCTCTTGCGGTTCAAAGGAACAAATTGGTGAAAGTAGGTTTCTTTCTGTGAGGCTTGGTAAATTCAAGAGCTTAAACCAAGAAGTGGAAAATGTGGGGAGAAGTCAAGGGGAGACGAGTAGTAGCTTCAATTTGGACGCGAGGAGATGTTACTCAATGGGTTCATTTCAATATGTACTTGCTGATTCGGAACTACAAGTGGCATTGTCAAGCAATAATGAGAATTCTTCGAGGCATAATGGAGATGTGGAAGGGAAGAAGATCAGTGGGAGGAGTAGAGGTGAGAGCTTCTCTGTCTCTAAGGTGTGGTTGTGGTCCAACAAGGGAAAATTCCCAAATTCTTCTGATATTTCTTCTCTTAGCTCAAATATAGGCCAATTGGCAAATATAACTAACTAA

Network for GWHGAAZE017896

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	144	187	1.90E-12

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.057
	SRR3591706	second leaf	2.850
	SRR3591707	mature leaf	9.299
	SRR3591708	Shoot apex	4.505
	SRR3591709	Stem	3.044
	SRR3591710	White floral bud	26.725
	SRR3591711	White flower	29.726
	SRR3591712	Green floral bud	21.033
	SRR3591713	Yellow flower	14.915
SRP173429	SRR8316895	Juvenile bud stage	3.518
	SRR8316896	Juvenile bud stage	6.661
	SRR8316897	Juvenile bud stage	3.900
	SRR8316894	Third green stage	3.752
	SRR8316900	Third green stage	11.735
	SRR8316901	Third green stage	8.344
	SRR8316898	Complete white stage	6.806
	SRR8316899	Complete white stage	4.767
	SRR8316903	Complete white stage	13.718
	SRR8316902	Silver flowering stage	11.562
	SRR8316904	Silver flowering stage	18.095
	SRR8316905	Silver flowering stage	10.096
	SRR8316906	Gold flowering stage	36.469
	SRR8316907	Gold flowering stage	26.494
	SRR8316908	Gold flowering stage	31.891
SRP132670	SRR6706286	Control	4.834
	SRR6706287	Light intensity 50%	4.540
	SRR6706288	Light intensity 20%	4.537
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.468
	CNS0095593	Slightly white alabastrum(diploid) 2	5.694
	CNS0095594	Slightly white alabastrum(diploid) 3	6.303
	CNS0095595	Whole white alabastrum(diploid) 2	3.669
	CNS0095596	Whole white alabastrum(diploid) 3	4.368
	CNS0095597	Whole white alabastrum(diploid) 4	6.514
	CNS0095598	Silvery flower (diploied) 1	6.099
	CNS0095599	Silvery flower (diploied) 2	9.835
	CNS0095600	Silvery flower (diploied) 3	27.794
	CNS0095601	Golden flower (diploid) 1	12.413
	CNS0095602	Golden flower (diploid) 2	24.742
	CNS0095603	Golden flower (diploid) 3	23.458
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.818
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.292
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.498
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.193
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.686
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.960
	CNS0095610	Silvery flower (tetraploid) 1	19.029
	CNS0095611	Silvery flower (tetraploid) 2	24.170
	CNS0095612	Silvery flower (tetraploid) 3	41.271
	CNS0095613	Golden flower (tetraploid) 1	35.034
	CNS0095614	Golden flower (tetraploid) 2	25.967
	CNS0095615	Golden flower (tetraploid) 3	57.722
CRA001975	CRR073297	Stem 1	4.922
	CRR073298	Stem 2	6.036
	CRR073299	Stem 3	5.192
	CRR073300	Leaf 1	5.539
	CRR073301	Leaf 2	3.185
	CRR073302	Leaf 3	5.019
	CRR073303	Juvenile bud 1	7.806
	CRR073304	Juvenile bud 2	9.976
	CRR073305	Juvenile bud 3	3.629
	CRR073306	Third green 1	15.753
	CRR073307	Third green 2	10.670
	CRR073308	Third green 3	11.559
	CRR073309	Second white 1	37.906
	CRR073310	Second white 2	32.452
	CRR073311	Second white 3	35.465
	CRR073312	Silver flowering 1	37.328
	CRR073313	Silver flowering 2	30.964
	CRR073314	Silver flowering 3	23.850
	CRR073315	Gold flowering 1	3.742
	CRR073316	Gold flowering 2	8.688
	CRR073317	Gold flowering 3	4.960
	CRR073318	Tawny withering 1	2.067
	CRR073319	Tawny withering 2	1.178
	CRR073320	Tawny withering 3	1.810