Gene detail

Detail information of GWHGAAZE017897

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006345040.1	PREDICTED: RNA-dependent RNA polymerase 2-like [Solanum tuberosum]
Swissprot	tr\|O82504\|RDR2_ARATH	RNA-dependent RNA polymerase 2
trEMBL	tr\|A0A068VES3\|A0A068VES3_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_430 {ECO:0000313\|EMBL:CDP19325.1}
TAIR10	AT4G11130.1	RNA-dependent RNA polymerase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12248988	12254048	+
GWHAAZE00000005	mRNA	12248988	12254048	+
GWHAAZE00000005	exon	12248988	12249524	+
GWHAAZE00000005	exon	12250208	12252114	+
GWHAAZE00000005	exon	12252808	12252958	+
GWHAAZE00000005	exon	12253251	12254048	+
GWHAAZE00000005	CDS	12248988	12249524	+
GWHAAZE00000005	CDS	12250208	12252114	+
GWHAAZE00000005	CDS	12252808	12252958	+
GWHAAZE00000005	CDS	12253251	12254048	+

Transcript Sequence
>GWHTAAZE017917 ATGGCAGTGGAAGACAAACCCACGGCGACAATTCGAGTCTCAAACATCCCTCAAACAGCCATAGCCAAGGAACTATTTGACTTCTTCGACTCCCTAATCGGCAAAGGTTCCGTCTTCGCCACCGAGATCATCACCGAACGCAAAAACTGGAAGTCCAGAGGCTTCGGCCGAGTCCAATTCGAAACCATGTCCGCCAAATCGGCAGCCCTAACCCTATCTCGAAACGGCAACGTAGTCTTCAAAGGCTACAACCTTTCCATCACCTCTTCCTTCGATGATGTCATATTCCGGCCCATCGAGCCCCGGAATCGGATCAATGGGGTGTTGCATTCCGGATTATTGGCCAAAGAGGACTGCATGTGTGTGACGGAGTCTTGGGAGGGGGTTAAGGCTTGGGTTATGCCTGAGAGGAAGTGCCTCGAGTTTTGGGTGGGGAATGGAAAGGAGGTTTATAGGTTGGAGGTTCAGTTTTGTAATGTCTTGGAGGCAATTGGGTGTTGTTTGTATGGGAATATACCTAATGCTGTTCTTTTGAAGCTCAAGCACGCACCAAGTATATATCAAAAGATCTCTGGGACTGATATCTCTTCAAAGTTCAGAGCTGATAGGTACCATTTTTGCAAGGAAAATTTCGAATTCCTCTGGGTCCGCACAACAGATTTCTCTAGTATGAAGTCTATAGGACACTCATCTGCATTCTGCTGTGAATTCGAAGATGGATCACCTGCTTTGGATGTATTTACTGGTTTGCCGTATTATAAGAAAGATTTGATAGAATTAACGTTGGAAAAAGCGGAGGATTTGTGTTCTTCGTCTGAGTTAGTTCCCCTTATAAGATCCCCACTGGATTCTACATTAGCATATGAGATCCTTTTCCAGCTTAACTCCCTTGTTCATACTCATAAACTTAGTCTTGCTGCAGTCAATGCTGATTTGATTGAGCTCCTTAGCGGCTTAGACTTGGACTCCGCTATTGCGGTTCTTCAGAAAATGCATAAGCTTCAGTCCACTTGTTATGAGCCTGTATCATTTATCAAGACCAGATTGCATATTCTGAGGAAAAACGTTAAGAATCTTCCTTCATTATCTCACAACAGGTTAACAAATCGTAATATGATGAGTTGTCATAGAATCCTTGTTACTCCGTCAAAGATTTACTGCTTGGGTCCCGAGCTCGAATCCTCTAACTATGTTGTAAAGAACTTTGCCGATTACGCTTCAGATTTCTTGAGAGTAACATTTGTTGATGAAGATTGGAGCAAGCTTCCCCCTAATGCTGTTTCCACAAGTATTAAGCAGGGTATCTTTTCTCAACCTTATAGAACTAATATATATCATCGGATACTCTCTATTCTTAGAGATGGGATTGTTATCGGTGAGAAAAGATTTCAATTTCTAGCCTTTTCTGCTAGTCAGCTCCGTTCGAATTCCGTATGGATGTTTGCTTCTAACAAGTTTGTGACGGCCGAAGATGTCAGGAAATGGATGGGTTGTTTTGATAAGATTCGTAGTGTCTCAAAATGTGCTGCAAGAATGGGCCAGTTGTTCAGCTCTTCTATGCAAACTTTTGAAGTCCCATTTCAACAAGTTGATATTATTCCCGATGTTGAAGTTACTGCTGATGGTATTGGGTATTGTTTTTCTGATGGAATCGGAAAGATTTCCCCGGCTTTTGCCAAAGAAGTTGCTACGAAGTGCGGAGTGAAGAATCACACTCCATCGGCGTTTCAAATCCGATATGGCGGCTATAAAGGCGTCATAGCTGTCGATCATGGTTCCTTCCGGAAGCTCTCGTTACGTAGTAGCATGCTTAAATTCGATTCGAAAAATACGATGCTTAACGTCACTAAGTGGAGTGAGTCCATGCCTTGCTATTTGAACCGGGAGGTTGTTTCCCTCTTGACGACTTTGGGTGTTGAGGACACAGCTTTCGAGGCAATGCAAGATGTCCAACTTCGACTACTCGACAAAATGCTGACAAGTAGAGAGGCGGCATTGGATGTTTTGGAGAGCATGAACTCTAGTGATGTCAAAAGCGTTATCGTCAAAATGTTACTTCAAGGTTATGAGCCAAATGTGGAACCTTATCTTTTTATGATGCTTCAATCTCATCGAGAGAACTTACTTTCTGATCTAAGAACTAGGTGTCGAATATTCGTCCCTAAGGGCCGGATTCTACTTGGGTGCTTGGATGAAACAGGGATTTTGAACTATGGCCAGGTTTATGTGCGAGTGACCTTGACCAAGGGAGAGCTAGAATCAACTGAGAAAAGTTTCTTTCAGAAGGTTGATGAGACTACATCTGTAGTGGTGGGGAAGGTCTTGGTCACTAAAAACCCTTGTCTTCACCCCGGAGATATCAGGGTCCTTGAAGCTGTCTTTGAGGTTTCATTAGTATCAAATGGTTTAACGGATTGCATTCTTTTCCCCCAGAAAGGAGAAAGGCCTCATCCAAATGAATGCTCCGGTGGTGATCTCGATGGTGATTTATATTTCATAAGCTGGGATGACAGTCTTATTCCTGGTCGAACAGTGACCCCCATGGACTACACGGGGCGAAGACCACGGCTGATGGATCACGATGTAACGTTAGAGGAAATTCATAAATTCTTTGTTGACTACATGATTAATGATACACTGGGTGCGATCTCAACCGCACATCTAGTACTTGCGGACCGTGAGCCTGAAAAAACATTGAGCCCAAAGTGCCTTCAGTTGGCAACCCTTCACTCGATGGCTGTGGACTTTGCAAAAACCGGAGCACCAGCTGAGATGCCTAGGTTCTTGAAACCGAGGGAGTACCCTGATTTCATGGAGAGGTGGGACAAACCTATGTACACCTCCCAAGGAGTACTGGGGAAACTGTACCGAGCCACCGTGGAATCAACGGCCAACAAAAACTCAAACTTTGTTCTGCTGGTGATCACCCAAGATTCTTACGATCCAGATCTTGAAGTGGATGGTTTTAAATCCTTTCTTGAAATTGCGCAAGACCACAAGGATATGTACTTGGATAAATTGAGTTACTTGATGAATTACTACGAGGCGGGTAGTGAAGATGAGATACTAACAGGGAATCTGAGGAACAAATCCTCATATTTGCAGAGGGATAATCGAAGATACGGAGAGACAAAGGATCGGATTATGGTGTCGGTTAAGAGCCTACATAGGGAAGCAAAAGGGTGGTTCGAGAGTAGCTGCAGTTTGAAGGAGAGACAAAAGTTGGCATCGGCATGGTATTATGTGACGTATCACTGTACTCATTGTCAAGAAAGCGTTAACTGTCTTGGTTTTCCATGGATTGTGGGTAATATATTGTTGGATATCAAGGCTGCTAAAAACCAAAGATCGTTAACGGAAGTTGGCACTTCTAATGGTGAAGAACAAAACTAA

Network for GWHGAAZE017897

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0106

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05183.13	RdRP	380	958	3.80E-178

Protein Sequence

>GWHPAAZE017907
MAVEDKPTATIRVSNIPQTAIAKELFDFFDSLIGKGSVFATEIITERKNWKSRGFGRVQFETMSAKSAALTLSRNGNVVFKGYNLSITSSFDDVIFRPIEPRNRINGVLHSGLLAKEDCMCVTESWEGVKAWVMPERKCLEFWVGNGKEVYRLEVQFCNVLEAIGCCLYGNIPNAVLLKLKHAPSIYQKISGTDISSKFRADRYHFCKENFEFLWVRTTDFSSMKSIGHSSAFCCEFEDGSPALDVFTGLPYYKKDLIELTLEKAEDLCSSSELVPLIRSPLDSTLAYEILFQLNSLVHTHKLSLAAVNADLIELLSGLDLDSAIAVLQKMHKLQSTCYEPVSFIKTRLHILRKNVKNLPSLSHNRLTNRNMMSCHRILVTPSKIYCLGPELESSNYVVKNFADYASDFLRVTFVDEDWSKLPPNAVSTSIKQGIFSQPYRTNIYHRILSILRDGIVIGEKRFQFLAFSASQLRSNSVWMFASNKFVTAEDVRKWMGCFDKIRSVSKCAARMGQLFSSSMQTFEVPFQQVDIIPDVEVTADGIGYCFSDGIGKISPAFAKEVATKCGVKNHTPSAFQIRYGGYKGVIAVDHGSFRKLSLRSSMLKFDSKNTMLNVTKWSESMPCYLNREVVSLLTTLGVEDTAFEAMQDVQLRLLDKMLTSREAALDVLESMNSSDVKSVIVKMLLQGYEPNVEPYLFMMLQSHRENLLSDLRTRCRIFVPKGRILLGCLDETGILNYGQVYVRVTLTKGELESTEKSFFQKVDETTSVVVGKVLVTKNPCLHPGDIRVLEAVFEVSLVSNGLTDCILFPQKGERPHPNECSGGDLDGDLYFISWDDSLIPGRTVTPMDYTGRRPRLMDHDVTLEEIHKFFVDYMINDTLGAISTAHLVLADREPEKTLSPKCLQLATLHSMAVDFAKTGAPAEMPRFLKPREYPDFMERWDKPMYTSQGVLGKLYRATVESTANKNSNFVLLVITQDSYDPDLEVDGFKSFLEIAQDHKDMYLDKLSYLMNYYEAGSEDEILTGNLRNKSSYLQRDNRRYGETKDRIMVSVKSLHREAKGWFESSCSLKERQKLASAWYYVTYHCTHCQESVNCLGFPWIVGNILLDIKAAKNQRSLTEVGTSNGEEQN

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0003968	molecular_function	RNA-directed 5'-3' RNA polymerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.651
	SRR3591706	second leaf	6.012
	SRR3591707	mature leaf	5.571
	SRR3591708	Shoot apex	9.405
	SRR3591709	Stem	7.255
	SRR3591710	White floral bud	9.323
	SRR3591711	White flower	13.798
	SRR3591712	Green floral bud	8.718
	SRR3591713	Yellow flower	11.975
SRP173429	SRR8316895	Juvenile bud stage	6.083
	SRR8316896	Juvenile bud stage	7.396
	SRR8316897	Juvenile bud stage	3.454
	SRR8316894	Third green stage	2.732
	SRR8316900	Third green stage	6.980
	SRR8316901	Third green stage	6.062
	SRR8316898	Complete white stage	2.218
	SRR8316899	Complete white stage	6.240
	SRR8316903	Complete white stage	4.071
	SRR8316902	Silver flowering stage	3.674
	SRR8316904	Silver flowering stage	4.646
	SRR8316905	Silver flowering stage	2.251
	SRR8316906	Gold flowering stage	9.456
	SRR8316907	Gold flowering stage	9.629
	SRR8316908	Gold flowering stage	10.079
SRP132670	SRR6706286	Control	4.065
	SRR6706287	Light intensity 50%	4.348
	SRR6706288	Light intensity 20%	4.541
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.235
	CNS0095593	Slightly white alabastrum(diploid) 2	4.437
	CNS0095594	Slightly white alabastrum(diploid) 3	5.080
	CNS0095595	Whole white alabastrum(diploid) 2	3.049
	CNS0095596	Whole white alabastrum(diploid) 3	2.568
	CNS0095597	Whole white alabastrum(diploid) 4	3.205
	CNS0095598	Silvery flower (diploied) 1	5.390
	CNS0095599	Silvery flower (diploied) 2	5.272
	CNS0095600	Silvery flower (diploied) 3	8.149
	CNS0095601	Golden flower (diploid) 1	5.758
	CNS0095602	Golden flower (diploid) 2	10.959
	CNS0095603	Golden flower (diploid) 3	10.038
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.733
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.305
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.569
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.682
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.570
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.026
	CNS0095610	Silvery flower (tetraploid) 1	7.636
	CNS0095611	Silvery flower (tetraploid) 2	10.280
	CNS0095612	Silvery flower (tetraploid) 3	6.180
	CNS0095613	Golden flower (tetraploid) 1	3.834
	CNS0095614	Golden flower (tetraploid) 2	8.048
	CNS0095615	Golden flower (tetraploid) 3	8.321
CRA001975	CRR073297	Stem 1	6.459
	CRR073298	Stem 2	6.214
	CRR073299	Stem 3	6.260
	CRR073300	Leaf 1	4.957
	CRR073301	Leaf 2	4.653
	CRR073302	Leaf 3	3.868
	CRR073303	Juvenile bud 1	4.136
	CRR073304	Juvenile bud 2	4.205
	CRR073305	Juvenile bud 3	6.060
	CRR073306	Third green 1	3.143
	CRR073307	Third green 2	1.760
	CRR073308	Third green 3	2.558
	CRR073309	Second white 1	5.597
	CRR073310	Second white 2	5.821
	CRR073311	Second white 3	6.147
	CRR073312	Silver flowering 1	4.783
	CRR073313	Silver flowering 2	5.793
	CRR073314	Silver flowering 3	4.119
	CRR073315	Gold flowering 1	3.802
	CRR073316	Gold flowering 2	4.161
	CRR073317	Gold flowering 3	3.001
	CRR073318	Tawny withering 1	6.678
	CRR073319	Tawny withering 2	4.657
	CRR073320	Tawny withering 3	6.143