Gene detail

Detail information of GWHGAAZE017899

Functional Annotation

Database	Orthologs	Annotation
Nr	KHG08400.1	Aldehyde dehydrogenase family 2 member B4, mitochondrial [Gossypium arboreum]
Swissprot	tr\|Q9SU63\|AL2B4_ARATH	Aldehyde dehydrogenase family 2 member B4, mitochondrial (Precursor)
trEMBL	tr\|D7SHU4\|D7SHU4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15054.3}
TAIR10	AT3G48000.1	aldehyde dehydrogenase 2B4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12271749	12274766	+
GWHAAZE00000005	mRNA	12271749	12274766	+
GWHAAZE00000005	exon	12271749	12271881	+
GWHAAZE00000005	exon	12271978	12272120	+
GWHAAZE00000005	exon	12272232	12272385	+
GWHAAZE00000005	exon	12272503	12272732	+
GWHAAZE00000005	exon	12272915	12273004	+
GWHAAZE00000005	exon	12273149	12273256	+
GWHAAZE00000005	exon	12273649	12273786	+
GWHAAZE00000005	exon	12273890	12274027	+
GWHAAZE00000005	exon	12274109	12274170	+
GWHAAZE00000005	exon	12274275	12274766	+
GWHAAZE00000005	CDS	12271749	12271881	+
GWHAAZE00000005	CDS	12271978	12272120	+
GWHAAZE00000005	CDS	12272232	12272385	+
GWHAAZE00000005	CDS	12272503	12272732	+
GWHAAZE00000005	CDS	12272915	12273004	+
GWHAAZE00000005	CDS	12273149	12273256	+
GWHAAZE00000005	CDS	12273649	12273786	+
GWHAAZE00000005	CDS	12273890	12274027	+
GWHAAZE00000005	CDS	12274109	12274170	+
GWHAAZE00000005	CDS	12274275	12274548	+
GWHAAZE00000005	three_prime_UTR	12274549	12274766	+

Transcript Sequence
>GWHTAAZE017919 AGAAATTATACGTGGGAAAAGGGCACCCATAGGTTTAGCACTGCTGCAGCAACAGAGGAACCAATCACCCCACCTGTTCAAATAAATTATACCCAGCTTCTAATCAATGGCCAATTTGTGGATTCTGCATCTGGAAAGACATTTCCAACCTTGGATCCTCGTACAGGCGAAGTAATTGCCCATCTTGCTGAAGGTGATGCTGAAGATATCAATCGCGCAGTGGCTTCTGCTCGCCAGGCATTTGATGAGGGACCATGGCCAAAAATGTCCCCTTATGAAAGGTCAAGGATATTGTTGCGGTTTGCTGATTTGGTTGAGAAACACAGCAATGAGCTCGCAGCTCTCGAAACATGGAACAATGGGAAGCCGTATGAGCAGGCTGCCAAATCTGAATTACCAATGCTTGTGCGTCTATTTCACTACTACGCTGGTTGGGCAGATAAAATCCATGGACTAACAGTTCCAGCTGATGGACCACACCACGTCCAAACCTTGCATGAGCCAATTGGCGTGGCGGGGCAGATTATACCATGGAATTTTCCTCTTATTATGTTTGCTTGGAAAGTTGGCCCTGCGCTTGCTTGTGGTAATACTGTTGTCTTAAAGACTGCTGAGCAAACCCCATTGACTGCTCTCTATGTAGCGAAGCTATTTCATGAGGCTGGTCTTCCTCCGGGAGTTCTAAATGTAGTTTCTGGCTATGGTCCAACTGCCGGTGCAGCTCTTGCTAGTCATATGGATGTCGATAAGCTAGCTTTTACTGGATCAACTGAGACCGGCAAGGTCGTACTCGAATTGGCTGCGAAAAGCAACCTGAAGCCTGTGACATTAGAGCTTGGGGGAAAATCACCTTTCATTGGTCAATGCTGCTGTGCTGGTTCTCGTACATACGTTCACGAACGTGTTTATGACGAGTTCCTAGAGAAAGCAAAAGCACGAGCTTTGAGACGAGTAGTTGGCGATCCCTTCAAGAAGGGTGTTGAACAAGGTCCTCAGATTGACTCGGAGCAATTTGAGAAAGTGCTGAGGTACATAAGAGCAGGAATTGAAAGCAATGCTACACTTGAATGTGGTGGCGGAAGGCTCGGGTCCAAAGGATTCTATGTCCAGCCAACTGTTTTCTCAAATGTCCAGGACGATATGCTAATAGCGAAAGATGAGATTTTTGGTCCGGTTCAGTCCATCTTGAAATTCAAGGACCTGAATGAAGTGATAAGAAGGGCAAATTCAACACGCTACGGCCTAGCAGCAGGAGTTTTCACGAGAAACATCGACACAGCCAACACGTTAACACGAGCATTGAGGGCGGGCAGTGTATGGGTTAATTGCTTTGATGTATTTGATGCTGCAATTCCTTTTGGTGGGTATAAAATGAGTGGTATTGGCAGGGAAAAGGGAATCTACAGCCTTCATAACTATTTGCAGGTGAAGGCTGTTGTCACTCCCCTAAAGAATCCAGCGTGGTTGTAATTCGACTAGTGCCACGCCATGTTTTTGTATCTCTATTGCTTCCCTCTAAGGAATAAGAAGATCGAGAGCATTCTGGCCTATTTGTAATTAATATAAATTAGAAACAAACTACTTTAATTTGCTCACAATGATGTTTGTTCTAATATGCTATGAAGCTTTGGTACGTGATGCATTATGTTTCCATATAATTAATAAAATTTTGGCCATCTAATTTCGAC

Network for GWHGAAZE017899

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00171.23	Aldedh	39	286	8.20E-91
PF00171.23	Aldedh	287	479	1.20E-70

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00128	ALDH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Glycolysis / Gluconeogenesis	map00010
		Ascorbate and aldarate metabolism	map00053
		Pyruvate metabolism	map00620
		Fatty acid degradation	map00071
		Glycerolipid metabolism	map00561
		Valine, leucine and isoleucine degradation	map00280
		Lysine degradation	map00310
		Arginine and proline metabolism	map00330
		Histidine metabolism	map00340
		Tryptophan metabolism	map00380
		beta-Alanine metabolism	map00410
		Insect hormone biosynthesis	map00981
		Limonene and pinene degradation	map00903
		Chloroalkane and chloroalkene degradation	map00625

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.958
	SRR3591706	second leaf	52.795
	SRR3591707	mature leaf	139.849
	SRR3591708	Shoot apex	8.546
	SRR3591709	Stem	12.012
	SRR3591710	White floral bud	3.243
	SRR3591711	White flower	4.741
	SRR3591712	Green floral bud	1.088
	SRR3591713	Yellow flower	17.068
SRP173429	SRR8316895	Juvenile bud stage	2.463
	SRR8316896	Juvenile bud stage	5.566
	SRR8316897	Juvenile bud stage	1.694
	SRR8316894	Third green stage	1.742
	SRR8316900	Third green stage	1.887
	SRR8316901	Third green stage	2.192
	SRR8316898	Complete white stage	1.506
	SRR8316899	Complete white stage	1.584
	SRR8316903	Complete white stage	2.148
	SRR8316902	Silver flowering stage	3.311
	SRR8316904	Silver flowering stage	3.114
	SRR8316905	Silver flowering stage	2.229
	SRR8316906	Gold flowering stage	20.326
	SRR8316907	Gold flowering stage	10.454
	SRR8316908	Gold flowering stage	18.502
SRP132670	SRR6706286	Control	10.616
	SRR6706287	Light intensity 50%	6.199
	SRR6706288	Light intensity 20%	4.234
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.827
	CNS0095593	Slightly white alabastrum(diploid) 2	1.538
	CNS0095594	Slightly white alabastrum(diploid) 3	5.618
	CNS0095595	Whole white alabastrum(diploid) 2	1.974
	CNS0095596	Whole white alabastrum(diploid) 3	2.340
	CNS0095597	Whole white alabastrum(diploid) 4	2.095
	CNS0095598	Silvery flower (diploied) 1	2.918
	CNS0095599	Silvery flower (diploied) 2	4.966
	CNS0095600	Silvery flower (diploied) 3	5.479
	CNS0095601	Golden flower (diploid) 1	7.217
	CNS0095602	Golden flower (diploid) 2	7.500
	CNS0095603	Golden flower (diploid) 3	7.311
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.449
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.839
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.770
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.696
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.989
	CNS0095610	Silvery flower (tetraploid) 1	11.932
	CNS0095611	Silvery flower (tetraploid) 2	8.726
	CNS0095612	Silvery flower (tetraploid) 3	9.570
	CNS0095613	Golden flower (tetraploid) 1	8.667
	CNS0095614	Golden flower (tetraploid) 2	10.820
	CNS0095615	Golden flower (tetraploid) 3	14.400
CRA001975	CRR073297	Stem 1	3.078
	CRR073298	Stem 2	2.912
	CRR073299	Stem 3	5.082
	CRR073300	Leaf 1	1.631
	CRR073301	Leaf 2	1.960
	CRR073302	Leaf 3	1.079
	CRR073303	Juvenile bud 1	0.563
	CRR073304	Juvenile bud 2	0.887
	CRR073305	Juvenile bud 3	1.112
	CRR073306	Third green 1	1.133
	CRR073307	Third green 2	0.719
	CRR073308	Third green 3	1.301
	CRR073309	Second white 1	8.296
	CRR073310	Second white 2	10.663
	CRR073311	Second white 3	10.430
	CRR073312	Silver flowering 1	22.861
	CRR073313	Silver flowering 2	20.230
	CRR073314	Silver flowering 3	16.420
	CRR073315	Gold flowering 1	177.612
	CRR073316	Gold flowering 2	248.431
	CRR073317	Gold flowering 3	170.733
	CRR073318	Tawny withering 1	28.209
	CRR073319	Tawny withering 2	33.587
	CRR073320	Tawny withering 3	3.653