Detail information of GWHGAAZE017905


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002511411.10protein binding protein, putative [Ricinus communis]
Swissprottr|Q8GYT9|SIS3_ARATH0E3 ubiquitin-protein ligase SIS3 (Precursor)
trEMBLtr|B9RB36|B9RB36_RICCO0Protein binding protein, putative {ECO:0000313|EMBL:EEF52013.1}
TAIR10AT3G47990.19E-157SUGAR-INSENSITIVE 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1234349212349239+
GWHAAZE00000005mRNA1234349212349239+
GWHAAZE00000005exon1234349212343675+
GWHAAZE00000005exon1234377312343807+
GWHAAZE00000005exon1234395812344085+
GWHAAZE00000005exon1234419812344271+
GWHAAZE00000005exon1234506012345198+
GWHAAZE00000005exon1234528012345372+
GWHAAZE00000005exon1234559012345655+
GWHAAZE00000005exon1234688712347006+
GWHAAZE00000005exon1234822912348342+
GWHAAZE00000005exon1234885612349239+
GWHAAZE00000005five_prime_UTR1234349212343646+
GWHAAZE00000005CDS1234364712343675+
GWHAAZE00000005CDS1234377312343807+
GWHAAZE00000005CDS1234395812344085+
GWHAAZE00000005CDS1234419812344271+
GWHAAZE00000005CDS1234506012345198+
GWHAAZE00000005CDS1234528012345372+
GWHAAZE00000005CDS1234559012345655+
GWHAAZE00000005CDS1234688712347006+
GWHAAZE00000005CDS1234822912348342+
GWHAAZE00000005CDS1234885612349239+
Transcript Sequence

Network for GWHGAAZE017905

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_22532951.50E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf46.042
SRR3591706second leaf30.461
SRR3591707mature leaf27.078
SRR3591708Shoot apex50.565
SRR3591709Stem53.176
SRR3591710White floral bud63.423
SRR3591711White flower47.625
SRR3591712Green floral bud43.009
SRR3591713Yellow flower33.951
SRP173429 SRR8316895Juvenile bud stage 23.507
SRR8316896Juvenile bud stage 28.627
SRR8316897Juvenile bud stage 12.532
SRR8316894Third green stage 12.500
SRR8316900Third green stage 35.615
SRR8316901Third green stage 36.117
SRR8316898Complete white stage 28.950
SRR8316899Complete white stage 58.089
SRR8316903Complete white stage 46.481
SRR8316902Silver flowering stage28.484
SRR8316904Silver flowering stage37.949
SRR8316905Silver flowering stage14.819
SRR8316906Gold flowering stage 42.364
SRR8316907Gold flowering stage 49.124
SRR8316908Gold flowering stage 41.473
SRP132670SRR6706286Control23.242
SRR6706287Light intensity 50%24.872
SRR6706288Light intensity 20%25.927
CNP0000432CNS0095592Slightly white alabastrum(diploid) 132.583
CNS0095593Slightly white alabastrum(diploid) 229.253
CNS0095594Slightly white alabastrum(diploid) 324.684
CNS0095595Whole white alabastrum(diploid) 220.965
CNS0095596Whole white alabastrum(diploid) 321.217
CNS0095597Whole white alabastrum(diploid) 419.211
CNS0095598Silvery flower (diploied) 131.218
CNS0095599Silvery flower (diploied) 224.599
CNS0095600Silvery flower (diploied) 339.061
CNS0095601Golden flower (diploid) 126.489
CNS0095602Golden flower (diploid) 233.551
CNS0095603Golden flower (diploid) 334.586
CNS0095604Slightly white alabastrum(tetraploid) 125.144
CNS0095605Slightly white alabastrum(tetraploid) 224.216
CNS0095606Slightly white alabastrum(tetraploid) 339.952
CNS0095607Whole white alabastrum(tetraploid) 114.224
CNS0095608Whole white alabastrum(tetraploid) 215.299
CNS0095609Whole white alabastrum(tetraploid) 326.466
CNS0095610Silvery flower (tetraploid) 133.348
CNS0095611Silvery flower (tetraploid) 241.517
CNS0095612Silvery flower (tetraploid) 347.411
CNS0095613Golden flower (tetraploid) 123.917
CNS0095614Golden flower (tetraploid) 232.283
CNS0095615Golden flower (tetraploid) 329.235
CRA001975CRR073297Stem 135.353
CRR073298Stem 232.314
CRR073299Stem 328.659
CRR073300Leaf 135.829
CRR073301Leaf 234.973
CRR073302Leaf 327.768
CRR073303Juvenile bud 130.071
CRR073304Juvenile bud 225.764
CRR073305Juvenile bud 334.557
CRR073306Third green 123.162
CRR073307Third green 224.341
CRR073308Third green 325.552
CRR073309Second white 122.270
CRR073310Second white 212.938
CRR073311Second white 311.954
CRR073312Silver flowering 17.360
CRR073313Silver flowering 210.995
CRR073314Silver flowering 37.716
CRR073315Gold flowering 118.861
CRR073316Gold flowering 218.339
CRR073317Gold flowering 313.657
CRR073318Tawny withering 140.855
CRR073319Tawny withering 234.336
CRR073320Tawny withering 338.759