Gene detail

Detail information of GWHGAAZE017910

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282635.1	1.7254E-150	PREDICTED: putative exosome complex component rrp40 [Vitis vinifera]
trEMBL	tr\|D7SHR2\|D7SHR2_VITVI	6E-151	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15022.3}
TAIR10	AT4G32175.1	3E-101	PNAS-3 related

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12401778	12407720	+
GWHAAZE00000005	mRNA	12401778	12407720	+
GWHAAZE00000005	exon	12401778	12402003	+
GWHAAZE00000005	exon	12403618	12403675	+
GWHAAZE00000005	exon	12403763	12403837	+
GWHAAZE00000005	exon	12404685	12404771	+
GWHAAZE00000005	exon	12405564	12405620	+
GWHAAZE00000005	exon	12406142	12406234	+
GWHAAZE00000005	exon	12407128	12407200	+
GWHAAZE00000005	exon	12407310	12407476	+
GWHAAZE00000005	exon	12407601	12407720	+
GWHAAZE00000005	five_prime_UTR	12401778	12402003	+
GWHAAZE00000005	five_prime_UTR	12403618	12403636	+
GWHAAZE00000005	CDS	12403637	12403675	+
GWHAAZE00000005	CDS	12403763	12403837	+
GWHAAZE00000005	CDS	12404685	12404771	+
GWHAAZE00000005	CDS	12405564	12405620	+
GWHAAZE00000005	CDS	12406142	12406234	+
GWHAAZE00000005	CDS	12407128	12407200	+
GWHAAZE00000005	CDS	12407310	12407476	+
GWHAAZE00000005	CDS	12407601	12407720	+

Transcript Sequence
>GWHTAAZE017930 AAAAAAGAAAAAAAATTTAAGAACACCGAGTATTGTATTGGGACCAACCCTAGGGTTTTGGATCCTCTTAAGTGGGCCAAACAAATTAATCCCGCGCGTTCTCAGTTGGCCCTTTGCTGATTATTTCTTACGTTTTTTTTTAATATATCTTTGTTTTGGCTCTCAACCGAGGAGAAGAGAGAATTTGCGAGAGAGAGAGAGGGGCTGAAGAATAGACGAAGAAAAGCTAAAAGGTGGAAGTTAAGATGTCGGGCTTGTCAACAAGCTTTGTTGATCAATTAGTTGTTCCAGGGGATGTGGTATTGGATCTCTCAGCTATGGCCAACCAAACCATAAAGCTTGGAGGCGGTCTTCGTCAGGACTGCGATGCTATAACTGTCATAAAGGCTGGGAAGTTGAGGTTTTCGAAGCCAAACAAGTATTGGGTGGAAAGCTCGCAGAAAAGATATGTACCATGTATGGGGGATACTGTTCTGGGAATTGTGGTAGACTCTAAAGCAGATAACTTTCTTGTGGACATAAAGGGACCTACATTGGCGTTCCTGCCCGTTCTCGCGTTTGAGGGAGGAACTAGAAGAAACATACCAAAGTTTGAGACAGGTACTTTGCTCTATGCTCGCGTTGTCAAGGCGAACACTGGCATGAACCCGGAACTGTCGTGCATGGATGTCACCGGGAAAGCAGCAGAATTTGGCCAACTTAAAGATGGTTACATGTTTGAGTCTTCAACTGGCCTATCTCGAATGCTGCTGAGTTCCCCAGCATGTCCAGTTCTTGAATCTCTTGGGAAGAAGCTCTCCTTTGAGATAGCAGTTGGTTTGAATGGCCGTGTTTGGGTGAACGCTGAATCTCCATCGACAGTTATTCTTGTGACGAATGCAATAATGAATTCGGAGTCTTTGAGTGGGGTACAACAAAAGATTATGGTGGAGAAACTGCTTAAGAGAGTTCAGTAA

Network for GWHGAAZE017910

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15985.6	KH_6	155	203	1.70E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03681	RRP40, EXOSC3	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.765
	SRR3591706	second leaf	18.598
	SRR3591707	mature leaf	19.909
	SRR3591708	Shoot apex	26.896
	SRR3591709	Stem	27.623
	SRR3591710	White floral bud	27.091
	SRR3591711	White flower	40.756
	SRR3591712	Green floral bud	29.186
	SRR3591713	Yellow flower	36.017
SRP173429	SRR8316895	Juvenile bud stage	21.408
	SRR8316896	Juvenile bud stage	32.823
	SRR8316897	Juvenile bud stage	10.203
	SRR8316894	Third green stage	9.035
	SRR8316900	Third green stage	28.792
	SRR8316901	Third green stage	25.857
	SRR8316898	Complete white stage	12.524
	SRR8316899	Complete white stage	30.662
	SRR8316903	Complete white stage	15.949
	SRR8316902	Silver flowering stage	18.835
	SRR8316904	Silver flowering stage	16.968
	SRR8316905	Silver flowering stage	11.075
	SRR8316906	Gold flowering stage	32.996
	SRR8316907	Gold flowering stage	40.102
	SRR8316908	Gold flowering stage	47.816
SRP132670	SRR6706286	Control	31.976
	SRR6706287	Light intensity 50%	31.245
	SRR6706288	Light intensity 20%	33.693
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.928
	CNS0095593	Slightly white alabastrum(diploid) 2	25.578
	CNS0095594	Slightly white alabastrum(diploid) 3	31.946
	CNS0095595	Whole white alabastrum(diploid) 2	27.555
	CNS0095596	Whole white alabastrum(diploid) 3	24.350
	CNS0095597	Whole white alabastrum(diploid) 4	25.942
	CNS0095598	Silvery flower (diploied) 1	26.159
	CNS0095599	Silvery flower (diploied) 2	19.139
	CNS0095600	Silvery flower (diploied) 3	21.559
	CNS0095601	Golden flower (diploid) 1	26.333
	CNS0095602	Golden flower (diploid) 2	20.081
	CNS0095603	Golden flower (diploid) 3	23.476
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.534
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.337
	CNS0095606	Slightly white alabastrum(tetraploid) 3	29.812
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.494
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.472
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.403
	CNS0095610	Silvery flower (tetraploid) 1	39.091
	CNS0095611	Silvery flower (tetraploid) 2	33.136
	CNS0095612	Silvery flower (tetraploid) 3	33.251
	CNS0095613	Golden flower (tetraploid) 1	33.575
	CNS0095614	Golden flower (tetraploid) 2	34.136
	CNS0095615	Golden flower (tetraploid) 3	27.198
CRA001975	CRR073297	Stem 1	29.719
	CRR073298	Stem 2	30.144
	CRR073299	Stem 3	28.895
	CRR073300	Leaf 1	28.694
	CRR073301	Leaf 2	35.698
	CRR073302	Leaf 3	27.696
	CRR073303	Juvenile bud 1	31.310
	CRR073304	Juvenile bud 2	22.997
	CRR073305	Juvenile bud 3	19.220
	CRR073306	Third green 1	20.012
	CRR073307	Third green 2	19.518
	CRR073308	Third green 3	16.941
	CRR073309	Second white 1	22.370
	CRR073310	Second white 2	25.408
	CRR073311	Second white 3	24.190
	CRR073312	Silver flowering 1	21.282
	CRR073313	Silver flowering 2	20.643
	CRR073314	Silver flowering 3	20.084
	CRR073315	Gold flowering 1	16.495
	CRR073316	Gold flowering 2	23.202
	CRR073317	Gold flowering 3	8.974
	CRR073318	Tawny withering 1	28.791
	CRR073319	Tawny withering 2	28.432
	CRR073320	Tawny withering 3	29.583