Gene detail

Detail information of GWHGAAZE017914

Functional Annotation

Database	Orthologs	Annotation
Nr	AFO64619.1	1-deoxy-d-xylulose 5-phosphate reductoisomerase [Centella asiatica]
Swissprot	tr\|Q8W250\|DXR_ORYSJ	1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic (Precursor)
trEMBL	tr\|K4K588\|K4K588_EUCUL	Chloroplast 1-deoxy-D-xylulose-5-phosphate reductase {ECO:0000313\|EMBL:AFU93071.1}
TAIR10	AT5G62790.1	1-deoxy-D-xylulose 5-phosphate reductoisomerase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12440456	12444805	+
GWHAAZE00000005	mRNA	12440456	12444805	+
GWHAAZE00000005	exon	12440456	12440549	+
GWHAAZE00000005	exon	12440789	12440970	+
GWHAAZE00000005	exon	12441155	12441241	+
GWHAAZE00000005	exon	12441641	12441766	+
GWHAAZE00000005	exon	12441861	12441923	+
GWHAAZE00000005	exon	12442325	12442474	+
GWHAAZE00000005	exon	12442671	12442738	+
GWHAAZE00000005	exon	12442979	12443090	+
GWHAAZE00000005	exon	12443273	12443377	+
GWHAAZE00000005	exon	12443653	12443774	+
GWHAAZE00000005	exon	12444015	12444161	+
GWHAAZE00000005	exon	12444261	12444805	+
GWHAAZE00000005	CDS	12440456	12440549	+
GWHAAZE00000005	CDS	12440789	12440970	+
GWHAAZE00000005	CDS	12441155	12441241	+
GWHAAZE00000005	CDS	12441641	12441766	+
GWHAAZE00000005	CDS	12441861	12441923	+
GWHAAZE00000005	CDS	12442325	12442474	+
GWHAAZE00000005	CDS	12442671	12442738	+
GWHAAZE00000005	CDS	12442979	12443090	+
GWHAAZE00000005	CDS	12443273	12443377	+
GWHAAZE00000005	CDS	12443653	12443774	+
GWHAAZE00000005	CDS	12444015	12444161	+
GWHAAZE00000005	CDS	12444261	12444432	+
GWHAAZE00000005	three_prime_UTR	12444433	12444805	+

Transcript Sequence
>GWHTAAZE017934 ATGGCTCTCAAATTTCTTTCTCCGACTACTGAAATTAAGGGCATTTCCTTCTTGGACACTGCTAAATCCAATCACCAACTTCCCAAGCTTCAAGGTGGATTTGCTTGCGTGAGAAAGGAAAATGGGGTAAAATCTGTAAATAGAATAACTTGTTCTGCTGCAAATCAACCTCCTCCAGCTTGGCCTGGACGTGCTGTAGTGGAACCTGGTTATAAGATTTGGGATGGTCCAAAGCCTATCTCCATTGTTGGCTCTACTGGTTCTATTGGAACTCAGACATTGGACATAGTTGCTGAAAATCCAGACAAATTCAAGGTTGTAGCACTGGCGGCTGGCTCCAACGTTACTCTTCTTGCTGATCAGGTCAAGACATTCAAACCCCAATTAGTTGCTGTAAGAAATGAGTCACTGATTGGTGAACTTAAAGAGGCTTTGGCAGATGCTGACTACAAACCTGAAATTGTTGCTGGGGAGCAAGGTGTCATTGAGGTTGCCCGCCACCCGGATTGTGTCACTGTAGTTACAGGAATAGTTGGTTGCGCTGGTTTAAAGCCTACTGTGGCTGCCATAGAAGCAGGGAAGGACATAGCCTTGGCTAACAAAGAGACACTAATTGCTGGTGGTCCCTTTGTCCTTCCTCTTGCTCAGAAGCACAATGTGAAGATTCTTCCTGCTGATTCCGAACATTCTGCTATATTCCAGTGTATTCAAGGCTTGCCAGAAGGTGCTCTTAGGCGCATAATTTTGACTGCGTCTGGTGGGGCTTTCAGGGACTGGCCTGTTGAGAAACTGAAAGAAGTTAAAGTAGCTGACGCTTTGAAACATCCGAACTGGAACATGGGAAAAAAGATAACAGTGGACTCAGCAACACTTTTCAATAAGGGTCTAGAAGTTATTGAAGCTCACTATCTTTATGGAGCTGACTATGATGATATCGAGATTGTTATTCACCCTCAGTCTATCATACATTCCATGATTGAGACACAGGATTCATCTATCCTTGCACAATTGGGGTGGCCTGACATGCGTTTGCCGATTCTATATACATTATCCTGGCCGGAGAGAATTTACTGCTCTGAGATTACTTGGCCCCGCCTCGATCTTTGCAAGCTTGGATCCCTAACATTCAAGAATCCTGACAATGTGAAGTACCCCTCCATGGATCTTGCCTATGCTGCTGGGCGAGCTGGAGGCACAATGACTGGAGTTCTTAGTGCAGCTAATGAGAAAGCTGTTGAGATGTTTATTGATGAAAAGATCAACTACCTGGACATTTTTAAGGTTGTGGAGCTTACATGTGAGAAGCATCAGGCAGAGTTGGTGACATCGCCTTCTCTAGAGGAAATCATATACTATGACTTGTGGGCCCGCAAGTACGCTGCCAGTTTAGAACCCGCAGCTTCAGGTCTTAATGCTGTTCTTGTATGATGATCTATATACAGCTGATCTCTCCCATTGGTCATGGTTAATGAAGATATATGCTGACCCAAGAATTAGGCGGTTGGATTCTCTGTGATTGGGGGCATCTTTTTGCTGAGGCTTGTGGGGATCAGGCAGTATTTGTATCATATTTGGAAATGAAAAAGTAAAATGGTAGCATTACTACGTTTGATAGTTTTTTCTTCTTCTATATAAGTTTGCTTTTTTAATATCAATGTGTTGCTTCTTTCCCCTTTAATTGTTCAATGTTCTTGTCAGTTATAAAAATGAGTTGCTTTAATTGGCCGTTTGATAAAATTGAAATGTTACAAGGATGTACAAAAGTAAGAGCATTAAAATAGTTATCATTTGGGTTAAATAA

Network for GWHGAAZE017914

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0264

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02670.17	DXP_reductoisom	80	208	3.30E-48
PF08436.13	DXP_redisom_C	222	305	5.10E-39
PF13288.7	DXPR_C	337	458	1.10E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00099	dxr	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900

Gene Ontology

GO term	Ontology	Name
GO:0008299	biological_process	isoprenoid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0030604	molecular_function	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
GO:0046872	molecular_function	metal ion binding
GO:0070402	molecular_function	NADPH binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.673
	SRR3591706	second leaf	280.473
	SRR3591707	mature leaf	145.369
	SRR3591708	Shoot apex	115.144
	SRR3591709	Stem	12.744
	SRR3591710	White floral bud	76.899
	SRR3591711	White flower	23.756
	SRR3591712	Green floral bud	86.408
	SRR3591713	Yellow flower	18.920
SRP173429	SRR8316895	Juvenile bud stage	70.586
	SRR8316896	Juvenile bud stage	50.334
	SRR8316897	Juvenile bud stage	26.283
	SRR8316894	Third green stage	10.940
	SRR8316900	Third green stage	27.544
	SRR8316901	Third green stage	33.135
	SRR8316898	Complete white stage	22.891
	SRR8316899	Complete white stage	89.537
	SRR8316903	Complete white stage	38.877
	SRR8316902	Silver flowering stage	8.114
	SRR8316904	Silver flowering stage	11.026
	SRR8316905	Silver flowering stage	7.099
	SRR8316906	Gold flowering stage	25.320
	SRR8316907	Gold flowering stage	16.962
	SRR8316908	Gold flowering stage	23.967
SRP132670	SRR6706286	Control	35.512
	SRR6706287	Light intensity 50%	35.122
	SRR6706288	Light intensity 20%	39.821
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	92.439
	CNS0095593	Slightly white alabastrum(diploid) 2	77.642
	CNS0095594	Slightly white alabastrum(diploid) 3	97.093
	CNS0095595	Whole white alabastrum(diploid) 2	143.887
	CNS0095596	Whole white alabastrum(diploid) 3	19.374
	CNS0095597	Whole white alabastrum(diploid) 4	102.011
	CNS0095598	Silvery flower (diploied) 1	23.957
	CNS0095599	Silvery flower (diploied) 2	20.318
	CNS0095600	Silvery flower (diploied) 3	28.177
	CNS0095601	Golden flower (diploid) 1	17.830
	CNS0095602	Golden flower (diploid) 2	25.058
	CNS0095603	Golden flower (diploid) 3	25.839
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.908
	CNS0095605	Slightly white alabastrum(tetraploid) 2	88.652
	CNS0095606	Slightly white alabastrum(tetraploid) 3	202.376
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.057
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.364
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.542
	CNS0095610	Silvery flower (tetraploid) 1	34.392
	CNS0095611	Silvery flower (tetraploid) 2	43.940
	CNS0095612	Silvery flower (tetraploid) 3	13.766
	CNS0095613	Golden flower (tetraploid) 1	52.755
	CNS0095614	Golden flower (tetraploid) 2	51.285
	CNS0095615	Golden flower (tetraploid) 3	44.556
CRA001975	CRR073297	Stem 1	43.765
	CRR073298	Stem 2	46.858
	CRR073299	Stem 3	57.879
	CRR073300	Leaf 1	28.634
	CRR073301	Leaf 2	22.090
	CRR073302	Leaf 3	29.054
	CRR073303	Juvenile bud 1	42.871
	CRR073304	Juvenile bud 2	68.234
	CRR073305	Juvenile bud 3	43.892
	CRR073306	Third green 1	12.081
	CRR073307	Third green 2	5.284
	CRR073308	Third green 3	8.125
	CRR073309	Second white 1	7.856
	CRR073310	Second white 2	8.836
	CRR073311	Second white 3	6.207
	CRR073312	Silver flowering 1	4.039
	CRR073313	Silver flowering 2	3.837
	CRR073314	Silver flowering 3	5.477
	CRR073315	Gold flowering 1	102.876
	CRR073316	Gold flowering 2	133.220
	CRR073317	Gold flowering 3	133.893
	CRR073318	Tawny withering 1	177.841
	CRR073319	Tawny withering 2	139.706
	CRR073320	Tawny withering 3	311.614