Detail information of GWHGAAZE017920


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007036233.15.57914E-36Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein [Theobroma cacao]
trEMBLtr|A0A061G139|A0A061G139_THECC2E-36Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein {ECO:0000313|EMBL:EOY20734.1}
TAIR10AT3G06040.33E-14Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene1248581112486074+
GWHAAZE00000005mRNA1248581112486074+
GWHAAZE00000005mRNA1248581112486074+
GWHAAZE00000005exon1248581112486074+
GWHAAZE00000005CDS1248581112486074+
GWHAAZE00000005CDS1248581112486074+
Transcript Sequence

Network for GWHGAAZE017920

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02935RP-L7, MRPL12, rplL Ribosome map03010
Ribosomemap03010

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.098
SRR3591706second leaf17.932
SRR3591707mature leaf16.656
SRR3591708Shoot apex21.960
SRR3591709Stem13.712
SRR3591710White floral bud14.053
SRR3591711White flower12.613
SRR3591712Green floral bud29.793
SRR3591713Yellow flower5.799
SRP173429 SRR8316895Juvenile bud stage 14.979
SRR8316896Juvenile bud stage 20.919
SRR8316897Juvenile bud stage 13.737
SRR8316894Third green stage 12.204
SRR8316900Third green stage 36.091
SRR8316901Third green stage 31.419
SRR8316898Complete white stage 7.028
SRR8316899Complete white stage 35.021
SRR8316903Complete white stage 11.205
SRR8316902Silver flowering stage3.438
SRR8316904Silver flowering stage5.887
SRR8316905Silver flowering stage2.140
SRR8316906Gold flowering stage 5.638
SRR8316907Gold flowering stage 8.681
SRR8316908Gold flowering stage 7.423
SRP132670SRR6706286Control42.383
SRR6706287Light intensity 50%46.939
SRR6706288Light intensity 20%49.742
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.011
CNS0095593Slightly white alabastrum(diploid) 224.474
CNS0095594Slightly white alabastrum(diploid) 322.566
CNS0095595Whole white alabastrum(diploid) 218.725
CNS0095596Whole white alabastrum(diploid) 322.377
CNS0095597Whole white alabastrum(diploid) 415.183
CNS0095598Silvery flower (diploied) 17.152
CNS0095599Silvery flower (diploied) 210.936
CNS0095600Silvery flower (diploied) 38.860
CNS0095601Golden flower (diploid) 16.586
CNS0095602Golden flower (diploid) 211.214
CNS0095603Golden flower (diploid) 311.305
CNS0095604Slightly white alabastrum(tetraploid) 129.881
CNS0095605Slightly white alabastrum(tetraploid) 230.160
CNS0095606Slightly white alabastrum(tetraploid) 336.743
CNS0095607Whole white alabastrum(tetraploid) 120.881
CNS0095608Whole white alabastrum(tetraploid) 215.079
CNS0095609Whole white alabastrum(tetraploid) 326.567
CNS0095610Silvery flower (tetraploid) 18.304
CNS0095611Silvery flower (tetraploid) 212.882
CNS0095612Silvery flower (tetraploid) 323.333
CNS0095613Golden flower (tetraploid) 14.117
CNS0095614Golden flower (tetraploid) 29.554
CNS0095615Golden flower (tetraploid) 34.028
CRA001975CRR073297Stem 128.844
CRR073298Stem 222.911
CRR073299Stem 320.346
CRR073300Leaf 128.989
CRR073301Leaf 227.329
CRR073302Leaf 328.173
CRR073303Juvenile bud 124.821
CRR073304Juvenile bud 226.844
CRR073305Juvenile bud 340.009
CRR073306Third green 15.675
CRR073307Third green 25.659
CRR073308Third green 35.957
CRR073309Second white 17.306
CRR073310Second white 22.561
CRR073311Second white 34.427
CRR073312Silver flowering 13.890
CRR073313Silver flowering 22.976
CRR073314Silver flowering 32.500
CRR073315Gold flowering 17.640
CRR073316Gold flowering 218.450
CRR073317Gold flowering 312.896
CRR073318Tawny withering 115.764
CRR073319Tawny withering 212.526
CRR073320Tawny withering 320.043