Gene detail

Detail information of GWHGAAZE017926

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002279033.1	5.9567E-143	PREDICTED: transcription factor MYB98 [Vitis vinifera]
Swissprot	tr\|Q9S7L2\|MYB98_ARATH	2E-86	Transcription factor MYB98
trEMBL	tr\|D7SHQ6\|D7SHQ6_VITVI	2E-143	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15016.3}
TAIR10	AT4G18770.1	4E-70	myb domain protein 98

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12528340	12530078	+
GWHAAZE00000005	mRNA	12528340	12530078	+
GWHAAZE00000005	exon	12528340	12528839	+
GWHAAZE00000005	exon	12528934	12529060	+
GWHAAZE00000005	exon	12529545	12530078	+
GWHAAZE00000005	CDS	12528340	12528839	+
GWHAAZE00000005	CDS	12528934	12529060	+
GWHAAZE00000005	CDS	12529545	12530078	+

Transcript Sequence
>GWHTAAZE017948 ATGGACAGTTGTTCATCGAAAGGTGTTTTTCAAGATTTAAACCATTTCGACCAGTTCCCATTTGCAGGACCATCATCGTTAAACACCGAATTCGGGGTGGAGACCACTTCTTTTGATCATTTTGATCATTTCACATTTGGGTCCTGTTCGAATGATATTGATTTATACGAGTTTAAGCCTTTTGAAGAAAATGGTGCTAATGGTAATAGTGCTGTCATTCAGAATTTTTACAGTGGTGGTGGGTACTTGAACGGTAAGAAAACTCCTGTGGACTTTAGTGTATCGGAACGGAGCCTCGTCCCATTCCAATGCCAAGAGATTAAGCCTTTGAACTTTGTGGTGCCAGATGAAGGCTCATGCGTAACGGCTAGAAAAGGTTATTGTAAAGAAAAATATGGGTTGATGAAAAAGAACAATAGTACTGCATTGACTAAAAGGCCGTCCAAGAGTCGAAAAAAGTCCAATTCGTCCAAGGGGCAATGGACCATCGAAGAAGATAGGATCTTGATTCAGTTGGTGGAGAAATTTGGAGTGAGAAAATGGTCTCACATAGCCCAGATGCTGAAAGGAAGGATTGGGAAACAATGCAGAGAGAGATGGCACAATCATCTAAGGCCTGATATCAAGAAAGATGTATGGAGTGAGGAAGAAGACAGGATTCTAATTGAAGCCCATGCAGAAGTGGGAAACAAATGGGCAGAAATCGCAAAGAAACTCCCTGGAAGAACCGAGAACTCGATAAAAAACCACTGGAACGCAACGAAAAGAAGGCAATACTCGAGGAGAAAATGCCGCTCCAAATGGCCAAGACCGAGTTCTCTTCTCCAGAACTACATAAAAAGCTTGAACTTGGACGCAAAATCAAACACAAATCGAAAAAATGCAGTCGTTGATCCGGCAGTAATCAAAGAACCAGTTCTGGCCAAGGCCGCAGAGTTGTGCTCCAGTGACAGGCTGGTTCCGGATTATGATTTTAATGAAGTCCCGGATTTTGATTTGGATGATGAGAAATTGTTTGAAGGGAATAATAGCATTGATAATTTTTTTGATGATAAAAGCTTTGATGTGGAGATGGTTAATTGTGACGTGGGTTCTTTGATGCATTGTGAAGTGAAGAAGGAGCTTGATTTGGTGGAGATGATCTCTCAAGTGGATGTTTAA

Network for GWHGAAZE017926

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13921.7	Myb_DNA-bind_6	161	217	1.60E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.051
	SRR3591706	second leaf	0.113
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.112
	SRR3591710	White floral bud	1.335
	SRR3591711	White flower	1.373
	SRR3591712	Green floral bud	1.076
	SRR3591713	Yellow flower	0.856
SRP173429	SRR8316895	Juvenile bud stage	0.847
	SRR8316896	Juvenile bud stage	2.060
	SRR8316897	Juvenile bud stage	0.433
	SRR8316894	Third green stage	0.305
	SRR8316900	Third green stage	1.332
	SRR8316901	Third green stage	0.995
	SRR8316898	Complete white stage	0.531
	SRR8316899	Complete white stage	0.514
	SRR8316903	Complete white stage	1.617
	SRR8316902	Silver flowering stage	1.299
	SRR8316904	Silver flowering stage	1.410
	SRR8316905	Silver flowering stage	0.904
	SRR8316906	Gold flowering stage	1.418
	SRR8316907	Gold flowering stage	2.645
	SRR8316908	Gold flowering stage	2.560
SRP132670	SRR6706286	Control	0.583
	SRR6706287	Light intensity 50%	0.507
	SRR6706288	Light intensity 20%	0.296
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.279
	CNS0095593	Slightly white alabastrum(diploid) 2	1.134
	CNS0095594	Slightly white alabastrum(diploid) 3	1.521
	CNS0095595	Whole white alabastrum(diploid) 2	0.888
	CNS0095596	Whole white alabastrum(diploid) 3	0.390
	CNS0095597	Whole white alabastrum(diploid) 4	0.565
	CNS0095598	Silvery flower (diploied) 1	2.123
	CNS0095599	Silvery flower (diploied) 2	2.739
	CNS0095600	Silvery flower (diploied) 3	2.994
	CNS0095601	Golden flower (diploid) 1	1.607
	CNS0095602	Golden flower (diploid) 2	1.709
	CNS0095603	Golden flower (diploid) 3	1.344
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.229
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.545
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.820
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.166
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.173
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.270
	CNS0095610	Silvery flower (tetraploid) 1	6.435
	CNS0095611	Silvery flower (tetraploid) 2	4.698
	CNS0095612	Silvery flower (tetraploid) 3	9.611
	CNS0095613	Golden flower (tetraploid) 1	4.364
	CNS0095614	Golden flower (tetraploid) 2	4.744
	CNS0095615	Golden flower (tetraploid) 3	1.778
CRA001975	CRR073297	Stem 1	0.599
	CRR073298	Stem 2	0.467
	CRR073299	Stem 3	0.051
	CRR073300	Leaf 1	1.530
	CRR073301	Leaf 2	0.788
	CRR073302	Leaf 3	0.276
	CRR073303	Juvenile bud 1	0.325
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.099
	CRR073306	Third green 1	0.202
	CRR073307	Third green 2	0.345
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.195
	CRR073310	Second white 2	0.166
	CRR073311	Second white 3	0.097
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.040
	CRR073316	Gold flowering 2	0.616
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.267
	CRR073319	Tawny withering 2	0.495
	CRR073320	Tawny withering 3	0.107