Gene detail

Detail information of GWHGAAZE017930

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002282228.1	0	PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Vitis vinifera]
Swissprot	tr\|Q02166\|TRPD_ARATH	0	Anthranilate phosphoribosyltransferase, chloroplastic (Precursor)
trEMBL	tr\|D7SHP6\|D7SHP6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI15006.3}
TAIR10	AT5G17990.1	6E-147	tryptophan biosynthesis 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12587286	12590686	+
GWHAAZE00000005	mRNA	12587286	12590686	+
GWHAAZE00000005	exon	12587286	12587411	+
GWHAAZE00000005	exon	12587522	12587665	+
GWHAAZE00000005	exon	12587824	12587985	+
GWHAAZE00000005	exon	12588101	12588184	+
GWHAAZE00000005	exon	12588347	12588535	+
GWHAAZE00000005	exon	12589177	12589267	+
GWHAAZE00000005	exon	12589439	12589498	+
GWHAAZE00000005	exon	12589672	12589790	+
GWHAAZE00000005	exon	12590230	12590364	+
GWHAAZE00000005	exon	12590627	12590686	+
GWHAAZE00000005	CDS	12587286	12587411	+
GWHAAZE00000005	CDS	12587522	12587665	+
GWHAAZE00000005	CDS	12587824	12587985	+
GWHAAZE00000005	CDS	12588101	12588184	+
GWHAAZE00000005	CDS	12588347	12588535	+
GWHAAZE00000005	CDS	12589177	12589267	+
GWHAAZE00000005	CDS	12589439	12589498	+
GWHAAZE00000005	CDS	12589672	12589790	+
GWHAAZE00000005	CDS	12590230	12590364	+
GWHAAZE00000005	CDS	12590627	12590686	+

Transcript Sequence
>GWHTAAZE017952 TCGGAGATTCGAAACTGCTTATTCAGATCACCATTTGATCTGACAAATCAAAGAACCTTGCTGGTCTCACCTCGGTTCAACTTACGTAACAATTCGACTTCTCCTACATCCTCGTCATTCAGTGAGTTGATTGAATCTTTAATTAATCGCGTGGACTTATCCGAATCAGAGGCCGAAGCGTCTCTTGATTTTTTACTAAATGATGCTAACGAGGCGTTGATCAGTGCATTTCTGGTTTTATTGCGAGCCAAAGGAGAGACTTATGAGGAAATTGTGGGATTGGCGAGAGCCATGATCAACAAAAGTAGGAAGGTAGAAGGGTTGAATGATGCTGTAGACATTGTTGGGACAGGTGGTGATGGTGCAAACACGGTCAACATATCTACCGGTGCTTCGATACTGGCCGCAGCTTGTGGCACAAAAGTCGCAAAGCAAGGGAATAGGTCGAGTTCGTCTGCTTGTGGAAGTGCTGATGTATTGGAAGAATTGGGGGTTCTGATTGAATTAGATCCCGAGGGGGTAGCTAAATGCGTGAAAGAAGTAGGAATTGGATTTATGATGGCTCCAATATACCATCCAGCAATGAAGATTGTCAGGCCCGTGAGGACGAAGCTGAAAGTGAAGACTGTATTTAATATCTTGGGCCCCCTGTTGAATCCAGCACGTGTACCTTTTGCAGTTGTCGGTGTGTACAAGGAGGAGTTAGTTTTTAAAATGGCAAAAGCACTTCAACTGTTTGGCATGAAGAGAGCATTAGTTGTTCACTCTGAGGGGCTAGATGAGATGAGTCCCCTTGGGCCTGGGCTAGTTTTTGACGTTACCTCCGATAAGATTGAGAAGTTCTCATTTGATCCATTGGAGTTTGGGATCCCTCGCTGCACAGTAGATGACTTGCGAGGTGGAGGTCCAGAGTATAATGCAGAGGTATTGAAGCGTGTACTATCAGGAGAAAGAGGGTCCATTGCTGATGCCTTTGTGCTAAATGCGGGAGCAGCTCTCTTGGTCAGTGGACGGGTAAACAATCTGGCTGAAGGAGTGGCCATGGCTCGTGAGACACAAATATCTGGCAAGGCTGTCAAGACTCTTGATTTGTGGATAGATATCTCGAATAAGGTGAAAGAGGCAGACTTGGTGGGTCGTGCAGTCCCAACTTTTGATAATCAAATGTAG

Network for GWHGAAZE017930

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0199
CFinderModule0254

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02885.18	Glycos_trans_3N	42	101	1.00E-12
PF00591.22	Glycos_transf_3	109	358	1.90E-96

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00766	trpD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

GO term	Ontology	Name
GO:0000162	biological_process	tryptophan biosynthetic process
GO:0004048	molecular_function	anthranilate phosphoribosyltransferase activity
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	58.783
	SRR3591706	second leaf	20.630
	SRR3591707	mature leaf	25.153
	SRR3591708	Shoot apex	30.327
	SRR3591709	Stem	41.620
	SRR3591710	White floral bud	78.377
	SRR3591711	White flower	64.789
	SRR3591712	Green floral bud	94.898
	SRR3591713	Yellow flower	90.781
SRP173429	SRR8316895	Juvenile bud stage	39.749
	SRR8316896	Juvenile bud stage	61.635
	SRR8316897	Juvenile bud stage	34.186
	SRR8316894	Third green stage	29.879
	SRR8316900	Third green stage	132.819
	SRR8316901	Third green stage	99.804
	SRR8316898	Complete white stage	51.239
	SRR8316899	Complete white stage	125.813
	SRR8316903	Complete white stage	75.625
	SRR8316902	Silver flowering stage	50.367
	SRR8316904	Silver flowering stage	59.531
	SRR8316905	Silver flowering stage	31.176
	SRR8316906	Gold flowering stage	81.119
	SRR8316907	Gold flowering stage	95.372
	SRR8316908	Gold flowering stage	107.408
SRP132670	SRR6706286	Control	120.115
	SRR6706287	Light intensity 50%	125.749
	SRR6706288	Light intensity 20%	139.676
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	52.116
	CNS0095593	Slightly white alabastrum(diploid) 2	47.849
	CNS0095594	Slightly white alabastrum(diploid) 3	50.323
	CNS0095595	Whole white alabastrum(diploid) 2	57.585
	CNS0095596	Whole white alabastrum(diploid) 3	68.300
	CNS0095597	Whole white alabastrum(diploid) 4	53.154
	CNS0095598	Silvery flower (diploied) 1	48.478
	CNS0095599	Silvery flower (diploied) 2	48.548
	CNS0095600	Silvery flower (diploied) 3	91.554
	CNS0095601	Golden flower (diploid) 1	44.798
	CNS0095602	Golden flower (diploid) 2	81.562
	CNS0095603	Golden flower (diploid) 3	79.496
	CNS0095604	Slightly white alabastrum(tetraploid) 1	71.176
	CNS0095605	Slightly white alabastrum(tetraploid) 2	61.575
	CNS0095606	Slightly white alabastrum(tetraploid) 3	85.804
	CNS0095607	Whole white alabastrum(tetraploid) 1	43.576
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.487
	CNS0095609	Whole white alabastrum(tetraploid) 3	120.681
	CNS0095610	Silvery flower (tetraploid) 1	95.821
	CNS0095611	Silvery flower (tetraploid) 2	119.939
	CNS0095612	Silvery flower (tetraploid) 3	110.371
	CNS0095613	Golden flower (tetraploid) 1	60.878
	CNS0095614	Golden flower (tetraploid) 2	92.385
	CNS0095615	Golden flower (tetraploid) 3	47.819
CRA001975	CRR073297	Stem 1	77.218
	CRR073298	Stem 2	74.481
	CRR073299	Stem 3	78.265
	CRR073300	Leaf 1	124.960
	CRR073301	Leaf 2	109.299
	CRR073302	Leaf 3	117.565
	CRR073303	Juvenile bud 1	163.445
	CRR073304	Juvenile bud 2	135.723
	CRR073305	Juvenile bud 3	131.074
	CRR073306	Third green 1	110.654
	CRR073307	Third green 2	68.005
	CRR073308	Third green 3	76.178
	CRR073309	Second white 1	60.428
	CRR073310	Second white 2	65.865
	CRR073311	Second white 3	52.352
	CRR073312	Silver flowering 1	66.487
	CRR073313	Silver flowering 2	60.837
	CRR073314	Silver flowering 3	57.867
	CRR073315	Gold flowering 1	41.358
	CRR073316	Gold flowering 2	66.665
	CRR073317	Gold flowering 3	37.417
	CRR073318	Tawny withering 1	54.987
	CRR073319	Tawny withering 2	43.126
	CRR073320	Tawny withering 3	42.002