Gene detail

Detail information of GWHGAAZE017932

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP16917.1	6.50176E-80	unnamed protein product [Coffea canephora]
trEMBL	tr\|A0A068V8N8\|A0A068V8N8_COFCA	2E-80	Coffea canephora DH200=94 genomic scaffold, scaffold_140 {ECO:0000313\|EMBL:CDP16917.1}
TAIR10	AT3G48200.1	1E-54	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12594225	12598165	-
GWHAAZE00000005	mRNA	12594225	12598165	-
GWHAAZE00000005	exon	12594225	12594284	-
GWHAAZE00000005	exon	12594362	12594617	-
GWHAAZE00000005	exon	12596798	12596907	-
GWHAAZE00000005	exon	12597016	12597250	-
GWHAAZE00000005	exon	12597356	12597404	-
GWHAAZE00000005	exon	12597487	12597640	-
GWHAAZE00000005	exon	12597755	12597774	-
GWHAAZE00000005	exon	12598024	12598165	-
GWHAAZE00000005	CDS	12598024	12598165	-
GWHAAZE00000005	CDS	12597755	12597774	-
GWHAAZE00000005	CDS	12597487	12597640	-
GWHAAZE00000005	CDS	12597356	12597404	-
GWHAAZE00000005	CDS	12597016	12597250	-
GWHAAZE00000005	CDS	12596798	12596907	-
GWHAAZE00000005	CDS	12594617	12594617	-
GWHAAZE00000005	three_prime_UTR	12594362	12594616	-
GWHAAZE00000005	three_prime_UTR	12594225	12594284	-

Transcript Sequence
>GWHTAAZE017954 ATGCAGCTGGATGATCATGTGCCTTCAGATTGTGAAGCTGGAGAAGGTTCGTACTCAGAATTACAGGATGGAAATCATACATTTGTGGTGCGTTTCAATGGGTCTCAAGGAGTTGGCTGCGCTACCTATAATTGGACTATTGCGAACCCAGCAGCGGTGGAGCTTCTTGTTTATGGTCCTGGTCAAGTTATGCCAACTATGCTCAATGTTATTCAGCCGAACCTCAAATATTCTCTTACATTGGGTTTGTCTTCAAGCGTTCACTTTGGAAGAGTGGTACTAGTGATGGACAAAAAATTCTGCACAGACGCTGCTGTTCATCAGTATCATCCTCAAATTAATGGTACTCCTAATTTTATATACAAAAGAAGCGTTTTTGCCAATCTAAGGACTCATGTACCCGAATGGCTACTTCAAATTGACAGTGAAACTAGAACAGTGCAAGCAACTAATAGACGTAAGAACCTAAAGGTTTATTTGTACTTCACAGATCCAGTTCTCAACTCATCTGCTGAAATTTTGAATTCTGTCCACACAAGTCAGGGGTCGCTTCTCCCTATAAGTGGCAACACCCTTGAAAATCGTAGATTTGGCTTTCAGTTTAAAGATATCTATGGCATGGCCATTGTCACAGTGAGCCTTGATTCGAATTTACTATTAAGCAGACAGGGGACCCCTGTATCTCGTGGCACCAGTTACTTTCCTTTATGATGGTTAGCAGTTACTCTACCAGTTGAATATTATGAATTCACAAGAGGTCTACGATGGAGTATCCCCTACTTCCGTCTCCCTTGGGAAACGGGCCACGTTCATCCGGTTATGGTGGGCTCCAGTTCCCCTACGAACCCACATTCTTATAGTTCCAAAGTTCTTGATTCGGGAACTTCTCAACAAGAGAATTCAGCTACAGCCACCTCAGTATATGGGTTGCCGCTTACTCCAGAGGAGTACAGATCATTTTTGGAGAACCAAAATATTCAACCGGAAGCTGAATATATTTCGGATTCAAGCAATTCAAATGAGTAA

Network for GWHGAAZE017932

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.221
	SRR3591706	second leaf	2.178
	SRR3591707	mature leaf	4.243
	SRR3591708	Shoot apex	3.792
	SRR3591709	Stem	4.540
	SRR3591710	White floral bud	1.064
	SRR3591711	White flower	0.438
	SRR3591712	Green floral bud	2.784
	SRR3591713	Yellow flower	0.154
SRP173429	SRR8316895	Juvenile bud stage	8.854
	SRR8316896	Juvenile bud stage	10.710
	SRR8316897	Juvenile bud stage	6.383
	SRR8316894	Third green stage	5.556
	SRR8316900	Third green stage	19.593
	SRR8316901	Third green stage	13.884
	SRR8316898	Complete white stage	1.629
	SRR8316899	Complete white stage	9.859
	SRR8316903	Complete white stage	3.921
	SRR8316902	Silver flowering stage	0.386
	SRR8316904	Silver flowering stage	1.135
	SRR8316905	Silver flowering stage	0.205
	SRR8316906	Gold flowering stage	0.199
	SRR8316907	Gold flowering stage	0.181
	SRR8316908	Gold flowering stage	0.474
SRP132670	SRR6706286	Control	20.208
	SRR6706287	Light intensity 50%	26.305
	SRR6706288	Light intensity 20%	26.288
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.607
	CNS0095593	Slightly white alabastrum(diploid) 2	12.678
	CNS0095594	Slightly white alabastrum(diploid) 3	8.189
	CNS0095595	Whole white alabastrum(diploid) 2	8.394
	CNS0095596	Whole white alabastrum(diploid) 3	6.861
	CNS0095597	Whole white alabastrum(diploid) 4	6.533
	CNS0095598	Silvery flower (diploied) 1	13.652
	CNS0095599	Silvery flower (diploied) 2	8.978
	CNS0095600	Silvery flower (diploied) 3	1.893
	CNS0095601	Golden flower (diploid) 1	9.731
	CNS0095602	Golden flower (diploid) 2	4.768
	CNS0095603	Golden flower (diploid) 3	4.310
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.090
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.490
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.500
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.246
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.192
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.469
	CNS0095610	Silvery flower (tetraploid) 1	3.186
	CNS0095611	Silvery flower (tetraploid) 2	1.907
	CNS0095612	Silvery flower (tetraploid) 3	0.887
	CNS0095613	Golden flower (tetraploid) 1	0.796
	CNS0095614	Golden flower (tetraploid) 2	0.597
	CNS0095615	Golden flower (tetraploid) 3	0.165
CRA001975	CRR073297	Stem 1	24.425
	CRR073298	Stem 2	23.197
	CRR073299	Stem 3	1.991
	CRR073300	Leaf 1	36.156
	CRR073301	Leaf 2	36.226
	CRR073302	Leaf 3	2.975
	CRR073303	Juvenile bud 1	3.428
	CRR073304	Juvenile bud 2	0.502
	CRR073305	Juvenile bud 3	2.114
	CRR073306	Third green 1	0.181
	CRR073307	Third green 2	0.039
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.048
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.478
	CRR073316	Gold flowering 2	4.648
	CRR073317	Gold flowering 3	0.736
	CRR073318	Tawny withering 1	2.986
	CRR073319	Tawny withering 2	5.098
	CRR073320	Tawny withering 3	2.287