Gene detail

Detail information of GWHGAAZE017957

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002278063.1	3.1329E-119	PREDICTED: protein ODORANT1 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q8LPH6\|MYB86_ARATH	2E-75	Transcription factor MYB86
trEMBL	tr\|B9IEX5\|B9IEX5_POPTR	4E-117	Uncharacterized protein {ECO:0000313\|EMBL:EEF05754.1}
TAIR10	AT1G57560.1	4E-64	myb domain protein 50

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	12887470	12888692	+
GWHAAZE00000005	mRNA	12887470	12888692	+
GWHAAZE00000005	exon	12887470	12887602	+
GWHAAZE00000005	exon	12887682	12887811	+
GWHAAZE00000005	exon	12887975	12888692	+
GWHAAZE00000005	CDS	12887470	12887602	+
GWHAAZE00000005	CDS	12887682	12887811	+
GWHAAZE00000005	CDS	12887975	12888692	+

Transcript Sequence
>GWHTAAZE017979 ATGGGGCGCCATTCTAATTGTGTAAATCAAAAGCTAAGGAAAGGCTTATGGTCACCTGAAGAAGATGAGAAGCTCTTCAATTACATTACTAGATTCGGCGTTGGCTGCTGGAGCTCTGTTCCTAAACTTGCCGGATTGCAAAGGTGTGGCAAGAGTTGTAGACTAAGATGGATAAATTACTTAAGGCCTGACCTAAAAAGAGGAATGTTTTCACAGCAAGAGGAGGATATCATACTTGGTCTCCATCAACTTCTTGGCAACAGGTGGGCTCAAATTGCAGCGCAATTACCGGGAAGAACAGATAACGAGATAAAGAACTTTTGGAATTCATATTTGAAAAAGAAGCTAATAAAGCAAGGCATTGATCCCAACACCCACAAGCCACTAACTGAGGTGCAAGAGAAAAGCTGTACAGACAAAGAGACTAATAATGGAGTTCCAATTGCAACATTATCAAATTCAGGTGAAACAGGAGAGCAACAATTTCAAGTGAGTCTTACAAATTACAGTGAAGTTTCCACAGAGCAACAACAACTCTATGATCCCTTATTCTTACTCGAATTTCAATCCGATGTCGGTCTAATTGGGTACAATAATCTCAATCCTGTACCTCAATTTCATCAAAATCTGAGACTACCCTATGACCAAAACCAGTATCCCAATTTTGGGTTCACTTCAATGCCAAATTTAACCAGCCTTGATCCTCAAAACATAACAGAATCCGATTTCTCTTCTACTTCAAGAATGAGTAGCACTTCTTTTATTGAATGTTCAAGTAATAATTCCAGTATCTCTCAACCCGGGTTTCAATTGAGCTCAACGTTTGAATCATTGCTTCAATTAGATGGGATAAAATCGGAAGAAATGAAACAGAGTACATGGCAAGAACAGCAGTTTTATTCTCACACTTCAAATGATTCAAGTAGTTACCCATTCGAGTCGCTATCGGGAAATTTAGCAGGGATTTTCCATCAAATATGA

Network for GWHGAAZE017957

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	1.70E-13
PF00249.32	Myb_DNA-binding	67	112	2.90E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.598
	SRR3591706	second leaf	2.047
	SRR3591707	mature leaf	0.273
	SRR3591708	Shoot apex	6.891
	SRR3591709	Stem	14.687
	SRR3591710	White floral bud	1.506
	SRR3591711	White flower	4.148
	SRR3591712	Green floral bud	0.859
	SRR3591713	Yellow flower	0.603
SRP173429	SRR8316895	Juvenile bud stage	0.258
	SRR8316896	Juvenile bud stage	0.895
	SRR8316897	Juvenile bud stage	0.507
	SRR8316894	Third green stage	0.181
	SRR8316900	Third green stage	0.476
	SRR8316901	Third green stage	0.614
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.749
	SRR8316903	Complete white stage	0.104
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.099
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.241
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.300
	SRR6706287	Light intensity 50%	0.275
	SRR6706288	Light intensity 20%	0.096
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.346
	CNS0095593	Slightly white alabastrum(diploid) 2	1.359
	CNS0095594	Slightly white alabastrum(diploid) 3	1.596
	CNS0095595	Whole white alabastrum(diploid) 2	1.110
	CNS0095596	Whole white alabastrum(diploid) 3	0.179
	CNS0095597	Whole white alabastrum(diploid) 4	0.144
	CNS0095598	Silvery flower (diploied) 1	0.498
	CNS0095599	Silvery flower (diploied) 2	1.041
	CNS0095600	Silvery flower (diploied) 3	0.097
	CNS0095601	Golden flower (diploid) 1	0.250
	CNS0095602	Golden flower (diploid) 2	0.373
	CNS0095603	Golden flower (diploid) 3	0.237
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.232
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.597
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.135
	CNS0095610	Silvery flower (tetraploid) 1	1.582
	CNS0095611	Silvery flower (tetraploid) 2	0.098
	CNS0095612	Silvery flower (tetraploid) 3	0.267
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.653
	CRR073298	Stem 2	1.221
	CRR073299	Stem 3	0.781
	CRR073300	Leaf 1	2.569
	CRR073301	Leaf 2	1.907
	CRR073302	Leaf 3	0.578
	CRR073303	Juvenile bud 1	0.265
	CRR073304	Juvenile bud 2	0.228
	CRR073305	Juvenile bud 3	0.422
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.107
	CRR073317	Gold flowering 3	0.196
	CRR073318	Tawny withering 1	10.078
	CRR073319	Tawny withering 2	6.854
	CRR073320	Tawny withering 3	22.083